| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,512,752 – 19,512,862 |
| Length | 110 |
| Max. P | 0.835712 |
| Location | 19,512,752 – 19,512,862 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 78.99 |
| Mean single sequence MFE | -30.85 |
| Consensus MFE | -20.40 |
| Energy contribution | -21.52 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.835712 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19512752 110 - 27905053 AGAUUAAAAUAGAGCCUGGGUAGGUAAUCUACUCACGUUUUUUGUACUGCAGCAAUACCAUCCAUGGGAAUUCCCAGAGGGUCGUAUUGGUGCCCCCGAAAAUGCGAUCA .((((......((((.(((((((.....))))))).))))((((....(((.((((((.((((.((((....))))..)))).)))))).)))...)))).....)))). ( -36.70) >DroPse_CAF1 4356 86 - 1 ------------------------UGCUCCACUCACGCUUCUUGUACUGCAGCAGGACCAUCCAAGGGAACUCCGAGAGAGUGGUGUUGUGGCCGCCCACAAUGCGGUCG ------------------------.((.((((((.....((((((......))))))...((..((....))..))..)))))).))...((((((.......)))))). ( -28.30) >DroSec_CAF1 6610 110 - 1 AAAUUAAAAUAGAGCCUGGGUAGGUAAUCUACUCACGUUUUUUGUACUGCAGCAAUACCAUCCAUGGGAAUUCCCAGAGGGCAGUAUUGGUGCCCCCGAAAAUGCGAUCA ...........((...(((((((.....)))))))(((((((((....(((.((((((..(((.((((....))))..)))..)))))).)))...)))))).))).)). ( -33.90) >DroSim_CAF1 6777 110 - 1 AGAUUAAAAUAGAGCCUGGGUAGGUAAUCAACUCACGUUUUUUGUACUGCAGCAAUACCAUCCAUGGGAAUUCCCAGAGGGUAGUAUUGGUGCCCCCGAAAAUGCGAUCA .(((.........((((....))))..........(((((((((....(((.((((((.((((.((((....))))..)))).)))))).)))...)))))).)))))). ( -32.40) >DroEre_CAF1 5515 108 - 1 AGAUUAGAAUAGAGCGCAG--AAAUAAUCAACUUACGUUUUUUGUACUGCAGCAAUACCAUCCAUGGGAAUUCCCAGAUGCUCGUGUUGGUGCCCCCGAAAAUGCGAUCA ...........((.(((((--(.....)).........((((((....(((.((((((((((..((((....))))))))...)))))).)))...)))))))))).)). ( -27.50) >DroYak_CAF1 6418 99 - 1 AGAUUAGAAU---GCGCC--------AUAUACUCACGUUUUUUGUACUGCAGCAACACCAUCCAUGGGAAUUCCCAGAUGCUCGUGUUGGUGCCCCCGAAAAUGCGAUCA ..........---.....--------.........(((((((((....(((.((((((((((..((((....))))))))...)))))).)))...)))))).))).... ( -26.30) >consensus AGAUUAAAAUAGAGCCUGG__AGGUAAUCUACUCACGUUUUUUGUACUGCAGCAAUACCAUCCAUGGGAAUUCCCAGAGGGUCGUAUUGGUGCCCCCGAAAAUGCGAUCA ...................................(((((((((....(((.((((((.(((..((((....))))...))).)))))).)))...)))))).))).... (-20.40 = -21.52 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:58 2006