Locus 7359

Sequence ID 3R_DroMel_CAF1
Location 19,489,918 – 19,490,014
Length 96
Max. P 0.625882
window11895

overview

Window 5

Location 19,489,918 – 19,490,014
Length 96
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 89.57
Mean single sequence MFE -20.72
Consensus MFE -16.20
Energy contribution -17.20
Covariance contribution 1.00
Combinations/Pair 1.18
Mean z-score -1.54
Structure conservation index 0.78
SVM decision value 0.19
SVM RNA-class probability 0.625882
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19489918 96 - 27905053
AACCUCUAAGCGAUCCAAUUUUUUUUUCUGCCAAAGUGGUAUGGAAAAUACGUCGCGUGGGACAAAACGUGAACCGCACAAACAAUCACAAAUAAC
.........(((((.......(((((..((((.....))))..)))))...)))))((((..((.....))..))))................... ( -19.10)
>DroSec_CAF1 88799 96 - 1
AACCUCCAAGCGAUCUUACUUUUUUUCGUGCUAAAAUGGCAUGGAAAAUACGUCGCGUGGGACAAAACGUGAACCGCACAAACAAUCACAAAUAAC
....((((.(((((.......(((((((((((.....)))))))))))...))))).)))).......((((.............))))....... ( -23.62)
>DroSim_CAF1 98507 96 - 1
AACCUCCUAGCGAUCUUACUUUUUUUCGUGCUAAAAUGGUAUGGAAAAUACGUCGCGUGGGACAAAACGUGAACCGCACAAACAAUCACAAAUAAC
....((((((((((.......(((((((((((.....)))))))))))...))))).)))))......((((.............))))....... ( -22.62)
>DroEre_CAF1 89925 95 - 1
AGCUUCGGAGCAAUCUUGCUUU-UUUCGUGCUAAAGUGGUAUGGAAAAUACGUCGCGUGGGACAAAACGUGCACUGCACAAACAAUCACAAAUAAC
.((..(((((((....)))))(-(((((((((.....))))))))))...))..))((((........((((...))))......))))....... ( -22.84)
>DroYak_CAF1 101680 95 - 1
AGCUUCAAAGCAAUCUUACUUU-UAUCGCGCUAAAGUUGUAUGGAAAAUACGUCGCGUGGGACAAAACGUGCACCGCACAAACAAUCACAAAUAAC
.(((....)))...........-..((((((......(((((.....)))))..))))))........((((...))))................. ( -15.40)
>consensus
AACCUCCAAGCGAUCUUACUUUUUUUCGUGCUAAAGUGGUAUGGAAAAUACGUCGCGUGGGACAAAACGUGAACCGCACAAACAAUCACAAAUAAC
.........(((((.......(((((((((((.....)))))))))))...)))))((((..((.....))..))))................... (-16.20 = -17.20 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:55 2006