Locus 7358

Sequence ID	3R_DroMel_CAF1
Location	19,489,552 – 19,489,643
Length	91
Max. P	0.999821

overview

Window 4

Location	19,489,552 – 19,489,643
Length	91
Sequences	5
Columns	92
Reading direction	forward
Mean pairwise identity	96.06
Mean single sequence MFE	-22.86
Consensus MFE	-20.94
Energy contribution	-20.86
Covariance contribution	-0.08
Combinations/Pair	1.11
Mean z-score	-2.74
Structure conservation index	0.92
SVM decision value	4.16
SVM RNA-class probability	0.999821
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19489552 91 + 27905053
AUUUUGAUUGCGCUUAUGUACGCAGCGGGUUU-UUUGAAUUUCAAAAUUUAAUUUCCUGCUGCCGGGUAAAGUCAUUUCAAAGUCGAUUUUU
(((((((.((.((((.((..(((((((((...-.(((((((....)))))))...))))))).))..))))))))..)))))))........ ( -24.30)
>DroSec_CAF1 88435 91 + 1
AUUUUGAUUGCGCUUAUGUACGCAGCGGGUUU-UUUAAAUUUCAAAAUUUAAUUUCCUGCUGUCGGGUAAAGUCAUUUCAAAGUCGUUUUUU
(((((((.((.((((.((..(((((((((...-.(((((((....)))))))...))))))).))..))))))))..)))))))........ ( -24.20)
>DroSim_CAF1 98142 91 + 1
AUUUUGAUUGCGCUUAUGUACGCAGCGGGUUU-UUUAAAUUUCAAAAUUUAAUUUCCUGCUGCCGGGUUAAGUCAUUUCAAAGUCGAUUUUU
(((((((.((.(((((.....((((((((...-.(((((((....)))))))...)))))))).....)))))))..)))))))........ ( -25.80)
>DroEre_CAF1 89558 91 + 1
AUUUUGAUUGCGCUUAUGUACGCAGCGGGUUUUUUUAAAUUUCAAAAUUUAAUUUCCGGCUGCCG-GUAAAGUCAUUUCAAAGUCGAUUUUU
(((((((.((.((((...((((((((.((.....(((((((....)))))))...)).)))))..-)))))))))..)))))))........ ( -20.80)
>DroYak_CAF1 101320 90 + 1
AUUUUGAUUGCGCUUAUGUACGCAGCGGGUUU-UUUAAAUUUCAAAAUUUAAUUUCCGGCUGCCG-GUAAAGUCAUUUUAAAGUCGAUUUUU
(((((((.((.((((...((((((((.((...-.(((((((....)))))))...)).)))))..-)))))))))..)))))))........ ( -19.20)
>consensus
AUUUUGAUUGCGCUUAUGUACGCAGCGGGUUU_UUUAAAUUUCAAAAUUUAAUUUCCUGCUGCCGGGUAAAGUCAUUUCAAAGUCGAUUUUU
(((((((.((.((((......((((((((.....(((((((....)))))))...))))))))......))))))..)))))))........ (-20.94 = -20.86 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:54 2006