| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,485,732 – 19,485,850 |
| Length | 118 |
| Max. P | 0.831947 |
| Location | 19,485,732 – 19,485,850 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 89.73 |
| Mean single sequence MFE | -25.46 |
| Consensus MFE | -19.18 |
| Energy contribution | -21.42 |
| Covariance contribution | 2.24 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.831947 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19485732 118 - 27905053 ACCUAGACUUAAGUCUAGCUUCAAGCACUUUUCUCGUUGACUUGUGCACACUUAUUUAUCUUUUCACUUUGAAUUUCCAUCCAGGUGUGGUUAAUAGAUGCAUUUUCGAACUGGCAUU ..((((((....))))))......((((...((.....))...)))).....((((.(((....(((((.((.......)).))))).))).))))(((((............))))) ( -21.40) >DroSec_CAF1 84743 116 - 1 AUCUAGACUUUAGUCUAGCUUCAAGCACU--UCUCGUUGACUUGUGCAUACUUAUUUAGCUUUUCACUUUGAAUUUCCAUCCAGGUGUGGCUAAUAUAUGCAUUUUCGAACUGACAUU ..((((((....))))))...........--((...((((...(((((((.....((((((...(((((.((.......)).))))).))))))..)))))))..))))...)).... ( -28.00) >DroSim_CAF1 94351 116 - 1 AUCUAGACUUUAGUCUAGCUUCAAGCACU--UCUCGUUGACUUGUGCAUACUUAUUUAGCUUUUCACUUUGAAUUUCCAUCCAGGUGUGGCUAAUAGAUGCAUUUUCGAACUGACAUU ..((((((....))))))...........--((...((((...((((((.((...((((((...(((((.((.......)).))))).)))))).))))))))..))))...)).... ( -29.10) >DroEre_CAF1 85626 108 - 1 ACCUAGACUUUAGUCUAGCUUCGGGAA-A--UCUCGCUGACUUU-------UUAUUUAGCUUUUCACUUUGAAUUUCCAUCCUGGUGUGGCUAAUAUAUGCAUUUUCGAACUGACAUU ..((((((....)))))).((((..((-.--((.....))....-------....((((((...((((..((.......))..)))).))))))........))..))))........ ( -22.30) >DroYak_CAF1 97506 116 - 1 ACCUAGACUUUAGUCAAGCUUGAAGCACU--UCUCACUGACUUGUGCAUAGUUAUUUAGCUUUUCACUUUGAAUUUGCAUCCAGGUGUGGCUAAUAGAUGCAUUUUCGAACUGACAUU .....(((....)))(((((.(((..(((--...(((......)))...)))..)))))))).(((.((((((..((((((..((.....))....))))))..)))))).))).... ( -26.50) >consensus ACCUAGACUUUAGUCUAGCUUCAAGCACU__UCUCGUUGACUUGUGCAUACUUAUUUAGCUUUUCACUUUGAAUUUCCAUCCAGGUGUGGCUAAUAGAUGCAUUUUCGAACUGACAUU ..((((((....)))))).............((...((((...((((((......((((((...(((((.((.......)).))))).))))))...))))))..))))...)).... (-19.18 = -21.42 + 2.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:53 2006