Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 19,485,328 – 19,485,432 |
Length | 104 |
Max. P | 0.541026 |
Location | 19,485,328 – 19,485,432 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 93.10 |
Mean single sequence MFE | -19.02 |
Consensus MFE | -14.92 |
Energy contribution | -15.36 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.05 |
Mean z-score | -1.50 |
Structure conservation index | 0.78 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.541026 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19485328 104 + 27905053 UAAUGGCCACAACAGAAAUAAUUACAUCAACGCUGG-GGAGAAAUGCUUUGAAAAGCUAAACAAAUUAUUAGCCAAGUGCACUUCUAACUAAACAUUCAAACGGC .....(((......((..........)).....(((-..((((.(((((((....(((((........))))))))).))).))))..)))...........))) ( -16.50) >DroSec_CAF1 84348 104 + 1 UAAUGGCCACAACAGAAAUAAUUACAUGAACGCAGG-GGAGAAAUGCUUUGAAAAGCUAAACAAAUAAUUAGCCAAGUGCACUUCUAACUAAACAUUCAAACGGC .....(((.....(....).......((((.(..((-..((((.(((((((....(((((........))))))))).))).))))..))...).))))...))) ( -16.90) >DroSim_CAF1 93957 104 + 1 UAAUGGCCACAACAGAAAUAAUUACAUCAACGCAAG-GGAGAAGUGCUUUGAAAAGCUAAACAAAUUAUUAGCCAAGUGCACUUCUAACUAAACAUUCAAACGGC .....(((......................(....)-..((((((((((((....(((((........))))))))).))))))))................))) ( -22.00) >DroEre_CAF1 85236 105 + 1 UAAUGGCCACAACCGAAAUAAUUACAUCAACGCAUGAGGAGAAAUGCUUUGAAGAGCUAAACAAAUUAUUAGCCAAGUGCAUUUCUAACUGAGAAUUCAAACGGC .....(((..................(((.....)))..((((((((((((....(((((........))))))))).))))))))................))) ( -18.10) >DroYak_CAF1 97109 104 + 1 UAAUGGCCACAACAGAAAUAAUUACAUCAACGCAAG-GCAGAAAUGCUUUGAGGAGCUAAACAAAUUAUUAGCCAAGUGCUUUUCUAACUGAAAAUUCAAACGGC .....(((.....(((((....(((.((....((((-(((....)))))))..))(((((........)))))...)))..)))))...(((....)))...))) ( -21.60) >consensus UAAUGGCCACAACAGAAAUAAUUACAUCAACGCAAG_GGAGAAAUGCUUUGAAAAGCUAAACAAAUUAUUAGCCAAGUGCACUUCUAACUAAACAUUCAAACGGC .....(((......................(....)...((((((((((((....(((((........))))))))).))))))))................))) (-14.92 = -15.36 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:52 2006