| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,474,554 – 19,474,654 |
| Length | 100 |
| Max. P | 0.997175 |
| Location | 19,474,554 – 19,474,654 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 70.87 |
| Mean single sequence MFE | -20.34 |
| Consensus MFE | -12.90 |
| Energy contribution | -15.52 |
| Covariance contribution | 2.62 |
| Combinations/Pair | 1.39 |
| Mean z-score | -3.44 |
| Structure conservation index | 0.63 |
| SVM decision value | 2.81 |
| SVM RNA-class probability | 0.997175 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19474554 100 - 27905053 UCUUUAAUAUGAGUGCCUUGAUCGAUAUUUAAAUUUAAAAUUCGUUGCGUUUUUCU-----UUUUUUGCAGCGCAUUUUGAAUUCGAUAUUU--UC-CGUACUCAUAU ......((((((((((...((..((((((..((((((((((.(((((((.......-----.....))))))).)))))))))).)))))).--))-.)))))))))) ( -28.90) >DroPse_CAF1 87169 93 - 1 UCAUUCAUAAUUAUGGCUU-------GUUUGUGUCUCAUAAUCGUACUCUCUCU-------CUAUCUUAAGAGCAUUACCCAUUCGAUCUAUCCUCCCACA-AGUUGU ............(..((((-------(((((((...)))))(((........((-------((......))))...........)))...........)))-)))..) ( -10.21) >DroSec_CAF1 73450 105 - 1 UCUUUAAUAUGAGUGCCUUGAUCGAUAUUUAUAUUUAAAAUUCGUUACCUGUUUUUUUUUUUUUUUUGUAGCGCAUUUUGAAUUCGAUAUUU--UC-CGCACUCAUAU ......((((((((((...((..((((((...(((((((((.((((((...................)))))).)))))))))..)))))).--))-.)))))))))) ( -26.81) >DroSim_CAF1 82608 101 - 1 UCUUUAAUAUGAGUGCCUUGAUCGAUAUUUAUAUUUAAAAUUCGUUACCUGUUUUU-----UUUUUUGUAGCGCAUUUUGAAUUCGAUAUUU--UCCCGCACUCAUAU ......((((((((((...((..((((((...(((((((((.((((((..(.....-----...)..)))))).)))))))))..)))))).--))..)))))))))) ( -27.90) >DroEre_CAF1 74322 87 - 1 ---------UUAGUGACUUGAUUAAUACUUGUAUUUAAAAUUCGUUCCCUCUU---------UUUUUGCAGCGCAUUUUGAAUUCGAUAUUU--UU-CGCAUUCAUAU ---------...((((..(((..((((.(((.(((((((((.((((.......---------.......)))).))))))))).))))))).--.)-))...)))).. ( -13.64) >DroYak_CAF1 85193 98 - 1 UCUUUUAAAUGGGUACCUUAGUUAAUAUUUAUAUUACAAAUUCGUUGCCUGUUU-------UUUUUUGUAGCGCAUUGUGAAUUCGAUAUUU--GC-CGCAUUCAUAU .......((((((((........((((((....((((((...((((((..(...-------...)..))))))..))))))....)))))))--))-).))))..... ( -14.60) >consensus UCUUUAAUAUGAGUGCCUUGAUCGAUAUUUAUAUUUAAAAUUCGUUACCUGUUU_______UUUUUUGUAGCGCAUUUUGAAUUCGAUAUUU__UC_CGCACUCAUAU ......((((((((((.......((((((...(((((((((.((((((...................)))))).)))))))))..)))))).......)))))))))) (-12.90 = -15.52 + 2.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:51 2006