Locus 7354

Sequence ID 3R_DroMel_CAF1
Location 19,465,951 – 19,466,071
Length 120
Max. P 0.939761
window11890

overview

Window 0

Location 19,465,951 – 19,466,071
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.00
Mean single sequence MFE -26.39
Consensus MFE -20.38
Energy contribution -22.26
Covariance contribution 1.88
Combinations/Pair 1.08
Mean z-score -2.40
Structure conservation index 0.77
SVM decision value 1.28
SVM RNA-class probability 0.939761
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19465951 120 + 27905053
ACUCAAGAAGCAAUUUAAUUGUAAAUUGUUGCAGAAUUUUAUUUCGAUGUGCAGUGAAGCGCACGAAAAGAAACAAUUUUGUAAUUACAACUUGCAAUUGAAAUUCACAUUAAAUAGUUU
......(((....(((((((((((.(((((((((((((((.(((((.(((((......)))))))))).))...)))))))))...)))).))))))))))).))).............. ( -29.80)
>DroSec_CAF1 65024 119 + 1
-CUCAAGAAGCAAUUUAAUUGUAAAUUGUUGCAGAAUUUUAUUUCGAUGUGCAGUGAAGCGCACGAAUAGAAACAAUUUUGUAAUUACAACUUGCAAUUGAAAUUCACAUUAAAUAGUUU
-.....(((....(((((((((((.(((((((((((((((..((((.(((((......)))))))))...))..)))))))))...)))).))))))))))).))).............. ( -28.70)
>DroSim_CAF1 74092 120 + 1
ACUCAAGAAGCAAUUUAAUUGUAAAUUGUUGCAGAAUUUUAUUUCGAUGUGCAGUGAAGCGCACGAAUAGAAACAAUUUUGUAAUUACAACUUGCAAUUGAAAUUCACAUUAAAUAGUUU
......(((....(((((((((((.(((((((((((((((..((((.(((((......)))))))))...))..)))))))))...)))).))))))))))).))).............. ( -28.70)
>DroEre_CAF1 64546 120 + 1
ACUCAAGAAGCAAUUUAAUUGUAAAUUGUUGCAGAAUUUUAUUUCGAGGAGCAGUGAAGCGUAUAAAAUGAAACAAUUGUGUAAUUACAACUUGGAUUUGAAAUGCACAUUAAAUAGUUU
.......((((.(((((((.((..((((((.(.(((......)))..).))))))...((((...((((....((((((((....))))).))).))))...))))))))))))).)))) ( -19.90)
>DroYak_CAF1 76345 120 + 1
ACUUAAGAAGCAAUUUAAUUGUAAAUUGUUGCAGAAUUUUAUUUCGAUGCGCAGUGAGGCGCAUAAAACCAAACAAUUUUGUAAUCACAACUUGCAUUUCAAAUGCACAUUAAAUAGUUU
.......((((.(((((((.((.....(((((((((((........((((((......))))))..........)))))))))))........((((.....))))))))))))).)))) ( -24.87)
>consensus
ACUCAAGAAGCAAUUUAAUUGUAAAUUGUUGCAGAAUUUUAUUUCGAUGUGCAGUGAAGCGCACGAAAAGAAACAAUUUUGUAAUUACAACUUGCAAUUGAAAUUCACAUUAAAUAGUUU
.............(((((((((((.(((((((((((((((.(((((.(((((......)))))))))).))...)))))))))...)))).))))))))))).................. (-20.38 = -22.26 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:50 2006