Locus 7352

Sequence ID 3R_DroMel_CAF1
Location 19,455,094 – 19,455,186
Length 92
Max. P 0.528092
window11886

overview

Window 6

Location 19,455,094 – 19,455,186
Length 92
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 70.31
Mean single sequence MFE -24.76
Consensus MFE -3.88
Energy contribution -4.76
Covariance contribution 0.88
Combinations/Pair 1.29
Mean z-score -1.67
Structure conservation index 0.16
SVM decision value -0.01
SVM RNA-class probability 0.528092
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19455094 92 + 27905053
AAGGCCAGACAAGAGC-------GGAAGGGUUUUUAGGGGUCAUGGAUUGGUGGG--UUUAGG-----UACAUGAAGUACGUGUACAAGGAACUCAGCUGAAGAGA
..((((...(((((((-------......)))))).).)))).....(..(((((--(((..(-----((((((.....)))))))...))))))).)..)..... ( -27.00)
>DroSim_CAF1 63306 91 + 1
AAGGCCAGACAAGGGC-------GGAAUGGUU-UUAGGGGUCAUGGAUUGGUGGG--UUUAGG-----UACAUGAAGUACGUGUACAAGGAACUCAGCUGAAGAGA
..((((...(.(((((-------......)))-)).).)))).....(..(((((--(((..(-----((((((.....)))))))...))))))).)..)..... ( -25.80)
>DroEre_CAF1 53645 98 + 1
GCGACCAGACGAGGGUUGGGCGGGGCAAGGGG-UUAGGGGUCAUGGAUUGGUGGC--UUUAGG-----UACAUGAAGUACGUGUACAAGGAACUCAGCUGAAGAGA
.(((((.......))))).....(((...(((-((.((((((((......)))))--)))..(-----((((((.....)))))))....))))).)))....... ( -26.20)
>DroYak_CAF1 65069 92 + 1
AGCACCAGACGACGG--------GG---AUGG-UUAGGGGUCAUGGAUUCGUGGG--CUUAGGUAUGGUACAUGAAGUACGUGUACAAGGAACUCGGCUGAAGAGA
....((((((..(..--------..---....-...)..))).))).(((.(.((--((.((.....(((((((.....)))))))......)).)))).).))). ( -22.50)
>DroAna_CAF1 69644 81 + 1
ACGGCCAGACAGGGGG-------GUGCU-GCC-UUAUGG----UGGGUGGGUGGAUGUUUAAA-------UCUG-----GAUACACAAGGAACCCAUCAGAUGAGA
..(((.((((......-------)).))-)))-...(((----(((((...((..((((((..-------..))-----))))..))....))))))))....... ( -22.30)
>consensus
AAGGCCAGACAAGGGC_______GGAAUGGGG_UUAGGGGUCAUGGAUUGGUGGG__UUUAGG_____UACAUGAAGUACGUGUACAAGGAACUCAGCUGAAGAGA
.....(((....(((..................(((((..((((......))))...)))))......((((((.....)))))).......)))..)))...... ( -3.88 =  -4.76 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:47 2006