Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 19,453,098 – 19,453,203 |
Length | 105 |
Max. P | 0.645535 |
Location | 19,453,098 – 19,453,203 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 66.44 |
Mean single sequence MFE | -36.48 |
Consensus MFE | -9.22 |
Energy contribution | -9.55 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.43 |
Mean z-score | -2.10 |
Structure conservation index | 0.25 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.645535 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19453098 105 + 27905053 ---UGCAAUUGCUGGCGAUAUCGAAAGCGCUGAAGGCGCUGUGCCAACGGCGUCGAUUGAGCUGCCGCUGCGACCGCCGGUCGAUAGCUGCAAAAAAA---AAAGCGGGAA ---.((....(((..((....))..)))(((.(.((((((((....))))))))...).)))(((.(((((((((...))))).)))).)))......---...))..... ( -40.10) >DroPse_CAF1 64576 102 + 1 AGUUGCAAUUGCUGUCGAUAUCGGAAUCGCUGCAAUCGCUCUGCUAGCGGUGUGGACUGCGCUGU---------CGCUGUGCGAAGGCUGCAAAGAGAGCAACAACAAAAA .((((...(((((.(((((......)))((.((..((((.(.((..(((((((.....)))))))---------.)).).))))..)).))...)).)))))))))..... ( -35.70) >DroSim_CAF1 61328 95 + 1 ------------UGGCGAUAUCGAAAGCGCUGAAGGCGCUGUGCCAACGGCGUCGAUUGAGCUGCCGCUGCGACCGCCGGUCGAUAGCUGCAAAAA-A---AAAGCGGGAA ------------.(((...((((...((((((..(((.....)))..))))))))))...)))((.(((((((((...))))).)))).)).....-.---.......... ( -35.20) >DroWil_CAF1 50580 92 + 1 ---UGCUGUUGCUGGCGGUUGCGGAAUCUCUGCAAUCGCUCGGCUAGCGGUGCUGACCGCCCUACCGUU---------GCCUGAUAGCUGUAAAUAGAGCAAAA------- ---.((((((((((((((((((((.....)))))))))).))))(((((((((.....))...))))))---------)...))))))................------- ( -36.50) >DroYak_CAF1 62342 93 + 1 AACUGCAAUUGCUGGCGAUAUCGAAAGCGCUGCAGGCGCUGUGCCAGCGGCGUCGAUUGAGCU---------------GGUCGAUAGCUGUAAAAAAA---AAAGCGGGAA ..((((....(((((((........(((((.....))))).)))))))((((((((((.....---------------))))))).))).........---...))))... ( -35.50) >DroPer_CAF1 66623 108 + 1 AGUUGCAAUUGCUGUCGAUAUCGGAAUCGCUGCAAUCGCUCUGCUAGCGGUGUGGACUGCGCUGUCGCUG---UCGCUGUGCGAAGGCUGCAAAGAGAGCAACAACAAAAA .((((..(((((.(.((((......))))).))))).(((((.((.(((((....)))))..(((.(((.---((((...)))).))).))).)))))))..))))..... ( -35.90) >consensus ___UGCAAUUGCUGGCGAUAUCGAAAGCGCUGCAAGCGCUCUGCCAGCGGCGUCGACUGAGCUGCCGCU_____CGC_GGUCGAUAGCUGCAAAAAGA___AAAGCGGGAA ...((((...((((.(((..((((..(((((((.(.........).)))))).)..))))....................))).))))))))................... ( -9.22 = -9.55 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:46 2006