Locus 7350

Sequence ID 3R_DroMel_CAF1
Location 19,452,496 – 19,452,602
Length 106
Max. P 0.513433
window11884

overview

Window 4

Location 19,452,496 – 19,452,602
Length 106
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 80.60
Mean single sequence MFE -31.00
Consensus MFE -22.17
Energy contribution -21.87
Covariance contribution -0.31
Combinations/Pair 1.14
Mean z-score -1.13
Structure conservation index 0.72
SVM decision value -0.04
SVM RNA-class probability 0.513433
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19452496 106 - 27905053
CAAA-AAGC-CAUUUCUGCUGCAAGCAACAACAGUUGCAACACC---AAUCCCAUCAUGGCCGUCCUGCGUACUAUGAAAUUAAAGGAGCGACUGGUCAUCAGUCUGGGUG
....-..((-(......(((.(..(((((....)))))......---.......((((((.((.....))..)))))).......).)))(((((.....)))))..))). ( -27.00)
>DroPse_CAF1 63896 101 - 1
CAAAGAAAC-CAUAGG---U---GGCAGCAACAGCUGCCCCACA---AAUCCCAUCAUGGCCGUCCUGCGUACUAUGAAGCUGAAGGAGCGGCUUUUCAUCAGCCUGGGGG
........(-(...((---.---((((((....))))))))...---...((((((((((.((.....))..)))))).(((((.((((.....)))).))))).)))))) ( -35.20)
>DroEre_CAF1 51052 106 - 1
CAAA-AAGC-CAUUUCAGCUGCAAGCAACAACAGUUGCAACACC---AAUCCCAUCAUGGCCGUCCUGCGUACUAUGAAAUUAAAGGAGCGACUGGUCAUCAGUCUGGGCG
....-..((-(......(((.(..(((((....)))))......---.......((((((.((.....))..)))))).......).)))(((((.....)))))..))). ( -29.50)
>DroYak_CAF1 61734 109 - 1
CAAA-AAGC-CAAUUCUGUUGCAAGCAACAGCAGUUGCAGCACCAACAAUCCCAUCAUGGCCGUCCUGCGUACUAUGAAAUUGAAGGAGCGACUGGUCAUCAGUCUGGGCG
....-..((-(((((((((((....)))))).))))...((.((..((((....((((((.((.....))..)))))).))))..)).))(((((.....)))))..))). ( -31.70)
>DroAna_CAF1 67348 107 - 1
CAAC-AAUCACACAGCAAGUGCCAGCGGUGAGACCUGCCACACU---AAUCCCAUCAUGGCCGUCCUGCGCACUAUGAAGCUCAAGGAGCGCCUGGUCAUCAGCCUGGGCG
....-.....(((.....)))((((.(.(((((((.((......---.......((((((.((.....))..)))))).((((...))))))..)))).))).)))))... ( -30.10)
>DroPer_CAF1 65943 101 - 1
CAAAGAAAC-CAUCGG---U---GGCAGCAACAGCUGCCUCACA---AAUCCCAUCAUGGCCGUCCUGCGUACUAUGAAGCUGAAGGAGCGGCUUUUCAUCAGCCUGGGGG
........(-(....(---.---((((((....)))))).)...---...((((((((((.((.....))..)))))).(((((.((((.....)))).))))).)))))) ( -32.50)
>consensus
CAAA_AAGC_CAUUGC_G_UGCAAGCAACAACAGCUGCAACACC___AAUCCCAUCAUGGCCGUCCUGCGUACUAUGAAACUGAAGGAGCGACUGGUCAUCAGCCUGGGCG
........................(((((....)))))............((((((((((.((.....))..))))))............(((((.....))))))))).. (-22.17 = -21.87 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:45 2006