| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,451,610 – 19,451,705 |
| Length | 95 |
| Max. P | 0.743953 |
| Location | 19,451,610 – 19,451,705 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 80.55 |
| Mean single sequence MFE | -19.59 |
| Consensus MFE | -13.26 |
| Energy contribution | -12.90 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.743953 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19451610 95 - 27905053 AUUCAAUUUAGCUGAAAUGCAACAAAAGUUGCAAUAAAACUUGGUUGGCCCCGGCAUUAAAACGUAAUUUGCUACAAAA---CAUAA-ACC-CG-AGGCAG-- ...((((..((......((((((....))))))......))..))))(((.(((.........(((......)))....---.....-..)-))-.)))..-- ( -18.35) >DroPse_CAF1 62980 95 - 1 AUUCAAUUUAGCAGAAAUGCAACAAAAGUUGCAAUAAAACUUGGCUUGGCCUGGCAUUAAAACGUAAUUUGCUGCAAAA---CAUAA-ACC-CA-AGGGGU-- ........(((((((..((((((....))))))......((.(((...))).)).............))))))).....---.....-(((-(.-..))))-- ( -19.70) >DroGri_CAF1 35950 97 - 1 AUUCAAUUUAGCA-AAAUGCAACAAAAGUUGCAAUAAGAUAUGGUUGG-CCAGACAUUAAAACAUAAUUUGCUGCAACCAGGCAGAAGGU-UCA-AGACGG-- ........(((((-((.((((((....)))))).(((....(((....-)))....)))........))))))).((((........)))-)..-......-- ( -19.30) >DroWil_CAF1 49432 94 - 1 AUUCAAUUUAGUUGA-AUGCAACAAAAGUUGCAAUAAAACUUGGUUGGC-UCGGUAUUAAAACGUAAUUUGCUACUACC---CUCAA-AAA--G-AGGAAGAG ..(((((..((((..-.((((((....))))))....))))..)))))(-((((((.((((......)))).))))..(---(((..-...--)-)))..))) ( -23.20) >DroAna_CAF1 66534 94 - 1 AUUCAAUUUAGCAGAAAUGCAACAAAAGUUGCAAUA--ACUCGGUUGGCCCCGGCAUUAAAACGUAAUUUGCUGCGAAA---CAUAA-ACC-CAGACCCCC-- ........(((((((..((((((....))))))...--.....((((....))))............))))))).....---.....-...-.........-- ( -17.30) >DroPer_CAF1 65056 95 - 1 AUUCAAUUUAGCAGAAAUGCAACAAAAGUUGCAAUAAAACUUGGCUUGGCCUGGCAUUAAAACGUAAUUUGCUGCAAAA---CAUAA-ACC-CA-AGGGGU-- ........(((((((..((((((....))))))......((.(((...))).)).............))))))).....---.....-(((-(.-..))))-- ( -19.70) >consensus AUUCAAUUUAGCAGAAAUGCAACAAAAGUUGCAAUAAAACUUGGUUGGCCCCGGCAUUAAAACGUAAUUUGCUGCAAAA___CAUAA_ACC_CA_AGGCGG__ ........(((((((..((((((....))))))..........(((......)))............)))))))............................. (-13.26 = -12.90 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:44 2006