Locus 7347

Sequence ID	3R_DroMel_CAF1
Location	19,444,361 – 19,444,452
Length	91
Max. P	0.968931

overview

Window 9

Location	19,444,361 – 19,444,452
Length	91
Sequences	6
Columns	93
Reading direction	forward
Mean pairwise identity	93.09
Mean single sequence MFE	-25.30
Consensus MFE	-20.67
Energy contribution	-20.95
Covariance contribution	0.28
Combinations/Pair	1.16
Mean z-score	-3.19
Structure conservation index	0.82
SVM decision value	1.63
SVM RNA-class probability	0.968931
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19444361 91 + 27905053
-CGCGAAAAACUUUGUUAUGUAAAGCGUUGACAGCUCAACGACGAUGACAACAACGUACCGCAGCGCAAAAACAGAAACGCUGCGAAAU-GCA
-.(((....((.((((..(((...(((((((....)))))).)....))))))).))..(((((((............)))))))...)-)). ( -24.70)
>DroSec_CAF1 43629 91 + 1
-CGCGAAAAACUUUGUUAUGCAAAGCGUUGACAGCUCAACGAUGAUGACAACAACGUACCGCAGCGCAAAAACAGAAACGCUGCGAAAU-GCA
-.(((.......(((((((.((...((((((....)))))).)))))))))........(((((((............)))))))...)-)). ( -26.20)
>DroSim_CAF1 52590 91 + 1
-CGCGAAAAACUUUGUUAUGCAAAGCGUUGACAGCUCAACGACGAUGACAACAACGUACCGCAGCGCAAAAACAGAAACGCUGCGAAAU-GCA
-.(((....((.(((((...((..(((((((....)))))).)..))..))))).))..(((((((............)))))))...)-)). ( -25.50)
>DroEre_CAF1 42956 91 + 1
-CGCGAAAAACUUUGUUAUGCAAAGCGUUGACAGCUCAACGACGAUGACAACAACGUACCGCAGCGCAAAAACAGAAACGCUGCGAAAU-GCA
-.(((....((.(((((...((..(((((((....)))))).)..))..))))).))..(((((((............)))))))...)-)). ( -25.50)
>DroYak_CAF1 53202 91 + 1
-CGCGAAAAACUUUGUUAUGCAAAGCGUUGACAGCUCAACGACGAUGACAACAACGUACCGCAGCGCAAAAACAGAAACGCUGCGAAAU-GCA
-.(((....((.(((((...((..(((((((....)))))).)..))..))))).))..(((((((............)))))))...)-)). ( -25.50)
>DroAna_CAF1 59198 91 + 1
AAGCGCAAAACUUUGUUAUGCAAAGCGUUGACAACUCAACGACGUUGACAACAGCGUACCGCAG--CAAGAGCAGCAACGUUGCAAAAAAAAA
..((((....(((((.....)))))((((((....))))))((((((....))))))...)).)--)....(((((...)))))......... ( -24.40)
>consensus
_CGCGAAAAACUUUGUUAUGCAAAGCGUUGACAGCUCAACGACGAUGACAACAACGUACCGCAGCGCAAAAACAGAAACGCUGCGAAAU_GCA
..((.....((.(((((...((..(((((((....)))))).)..))..))))).))..(((((((............))))))).....)). (-20.67 = -20.95 +   0.28)

alignment

secondary structure

dotplot

Window 0

Location	19,444,361 – 19,444,452
Length	91
Sequences	6
Columns	93
Reading direction	reverse
Mean pairwise identity	93.09
Mean single sequence MFE	-28.63
Consensus MFE	-22.74
Energy contribution	-23.60
Covariance contribution	0.86
Combinations/Pair	1.04
Mean z-score	-2.66
Structure conservation index	0.79
SVM decision value	0.41
SVM RNA-class probability	0.724210
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19444361 91 - 27905053
UGC-AUUUCGCAGCGUUUCUGUUUUUGCGCUGCGGUACGUUGUUGUCAUCGUCGUUGAGCUGUCAACGCUUUACAUAACAAAGUUUUUCGCG-
.((-...(((((((((..........))))))))).((.(((((((......((((((....))))))......))))))).)).....)).- ( -27.50)
>DroSec_CAF1 43629 91 - 1
UGC-AUUUCGCAGCGUUUCUGUUUUUGCGCUGCGGUACGUUGUUGUCAUCAUCGUUGAGCUGUCAACGCUUUGCAUAACAAAGUUUUUCGCG-
.((-...(((((((((..........))))))))).((.(((((((((....((((((....))))))...)).))))))).)).....)).- ( -28.90)
>DroSim_CAF1 52590 91 - 1
UGC-AUUUCGCAGCGUUUCUGUUUUUGCGCUGCGGUACGUUGUUGUCAUCGUCGUUGAGCUGUCAACGCUUUGCAUAACAAAGUUUUUCGCG-
.((-...(((((((((..........))))))))).((.(((((((((..(.((((((....)))))))..)).))))))).)).....)).- ( -30.20)
>DroEre_CAF1 42956 91 - 1
UGC-AUUUCGCAGCGUUUCUGUUUUUGCGCUGCGGUACGUUGUUGUCAUCGUCGUUGAGCUGUCAACGCUUUGCAUAACAAAGUUUUUCGCG-
.((-...(((((((((..........))))))))).((.(((((((((..(.((((((....)))))))..)).))))))).)).....)).- ( -30.20)
>DroYak_CAF1 53202 91 - 1
UGC-AUUUCGCAGCGUUUCUGUUUUUGCGCUGCGGUACGUUGUUGUCAUCGUCGUUGAGCUGUCAACGCUUUGCAUAACAAAGUUUUUCGCG-
.((-...(((((((((..........))))))))).((.(((((((((..(.((((((....)))))))..)).))))))).)).....)).- ( -30.20)
>DroAna_CAF1 59198 91 - 1
UUUUUUUUUGCAACGUUGCUGCUCUUG--CUGCGGUACGCUGUUGUCAACGUCGUUGAGUUGUCAACGCUUUGCAUAACAAAGUUUUGCGCUU
.........(((((((.(((((.....--..))))))))..((((.((((........)))).))))((((((.....)))))).)))).... ( -24.80)
>consensus
UGC_AUUUCGCAGCGUUUCUGUUUUUGCGCUGCGGUACGUUGUUGUCAUCGUCGUUGAGCUGUCAACGCUUUGCAUAACAAAGUUUUUCGCG_
.......(((((((((..........))))))))).((.(((((((((..(.((((((....)))))))..)).))))))).))......... (-22.74 = -23.60 +   0.86)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:41 2006