| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,436,405 – 19,436,497 |
| Length | 92 |
| Max. P | 0.634610 |
| Location | 19,436,405 – 19,436,497 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 69.08 |
| Mean single sequence MFE | -22.70 |
| Consensus MFE | -4.47 |
| Energy contribution | -5.58 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.20 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.634610 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19436405 92 + 27905053 GAGGGGGA-----------CAAAAAAAAGGAGGAAGAAAUAGGGUUG--UGCAAGAGGAG---AAAGAAAAAUGAUCUCUUGUGCAUAAUUUACAGUUUUGCCUUACG ...(....-----------).........((((((((....((((((--((((..(((((---(...........)))))).))))))))))....)))).))))... ( -21.90) >DroPse_CAF1 47905 83 + 1 CAGGAGG------------CAGGA-----------GGCAGGAGGAAC--UGCACGAGGAGUGAAAAGAAAAAUGAUCUCUUGUGCAUAAUUUACAGUUUCGCCUUACG ...((((------------(..((-----------(((..(((....--((((((((..((.(.........).))..))))))))...)))...))))))))))... ( -22.30) >DroEre_CAF1 35321 103 + 1 GUGGGGGGCGGGGGUGUUCCGGAAAAAUCGGACAAGGAAUAGGGCUG--UGCAAGAGGAG---AAAGAAAAAUGAUCUCUUGUGCAUAAUUUACAGUUUUGCCUUACG ..(..((((((((.((((((((.....))))).............((--((((..(((((---(...........)))))).))))))....))).))))))))..). ( -29.60) >DroYak_CAF1 45169 93 + 1 GUGGGGA------------UGGGAAAAACGGGAAAGGAAUAGGGCUGUGUGCAAGAGGAG---AAAGAAAAAUGAUCUCUUGUGCAUAAUUUACAGUUUUGCCUUACG ((((((.------------..(......)..........((((((((((((((..(((((---(...........)))))).))))).....))))))))))))))). ( -23.00) >DroAna_CAF1 50928 86 + 1 UA---AG-------------AAGGAU-AGAGGAAAAAACUGUGGGCG--CGGGAACGGAG---AAAGAAAAAUGAUCUCUUGUGCAUAAUUUACAGUUUUGCCUUACG ..---..-------------......-.((((..(((((((((((((--((....)((((---(...........))))).)))).....)))))))))).))))... ( -20.30) >DroPer_CAF1 49881 76 + 1 CAGGA------------------------------GGCAGGAGGAAC--UGCACGAGGAGUGAAAAGAAAAAUGAUCUCUUGUGCAUAAUUUACAGUUUCGCCUUACG ...((------------------------------(((....(((((--((((((((..((.(.........).))..))))))).........)))))))))))... ( -19.10) >consensus GAGGGGG____________CAGGAAA_A_GGG_AAGGAAUAGGGAUG__UGCAAGAGGAG___AAAGAAAAAUGAUCUCUUGUGCAUAAUUUACAGUUUUGCCUUACG .......................................((((.......((((((((.................))))))))(((.(((.....))).))))))).. ( -4.47 = -5.58 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:38 2006