Locus 7343

Sequence ID 3R_DroMel_CAF1
Location 19,425,855 – 19,425,960
Length 105
Max. P 0.509722
window11874

overview

Window 4

Location 19,425,855 – 19,425,960
Length 105
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 82.68
Mean single sequence MFE -18.15
Consensus MFE -10.54
Energy contribution -12.35
Covariance contribution 1.81
Combinations/Pair 1.05
Mean z-score -1.93
Structure conservation index 0.58
SVM decision value -0.05
SVM RNA-class probability 0.509722
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19425855 105 - 27905053
ACAACAAAAUGAUUAUUCAAUUUCAAUAGGCGUCUUGAAAUCCAACACAAAAAUCUACAAUGCUCGCCUUUU-CAACAGGGUAAGGCAUACAUUUGCAGAUGAAUU
..............((((.(((((((........)))))))...........((((.(((((...(((((.(-(.....)).)))))...)).))).)))))))). ( -14.90)
>DroSec_CAF1 25358 106 - 1
ACAACAAAAUGAUUAUUCAAUUUCAAUAGCCACCUUGAAAUCCGACACAAAAAUCUACAAUGCUCGCCUUUUCCAAAAGGGAAAGGCAUACAUUUGCAGAUUAAUU
.........(((....)))(((((((........)))))))..........(((((.(((((...(((((((((....)))))))))...)).))).))))).... ( -22.40)
>DroSim_CAF1 34253 106 - 1
ACAACAAAAUGAUUAUUCAAUUUCAAUAGCCACCUUGAAAUCCGACACAAAGAUCUACAAUGCUCGCCUUUUCCAAAAGGGAAAGGCAUACAUUUGCAGAUAAAUU
.........(((....)))(((((((........)))))))...........((((.(((((...(((((((((....)))))))))...)).))).))))..... ( -21.60)
>DroYak_CAF1 34324 90 - 1
--AACAAAAUGAUUAUUCAAUUUGCAUGGCCGCCUUGAAAUCU---ACAAUG----------CUCGCCUUUU-CAACAAGGAACGUCAUUUAUUUGCAGAUAAAUG
--.......(((....)))(((((((.(((.((.(((......---.))).)----------)..))).(((-(.....))))...........)))))))..... ( -13.70)
>consensus
ACAACAAAAUGAUUAUUCAAUUUCAAUAGCCACCUUGAAAUCCGACACAAAAAUCUACAAUGCUCGCCUUUU_CAAAAGGGAAAGGCAUACAUUUGCAGAUAAAUU
......(((((........(((((((........)))))))........................(((((((((....)))))))))...)))))........... (-10.54 = -12.35 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:35 2006