Locus 7342

Sequence ID 3R_DroMel_CAF1
Location 19,423,057 – 19,423,177
Length 120
Max. P 0.942394
window11873

overview

Window 3

Location 19,423,057 – 19,423,177
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.33
Mean single sequence MFE -36.87
Consensus MFE -26.13
Energy contribution -26.22
Covariance contribution 0.09
Combinations/Pair 1.50
Mean z-score -1.82
Structure conservation index 0.71
SVM decision value 1.33
SVM RNA-class probability 0.942394
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19423057 120 - 27905053
UGUUUGGCCUUUACAAAUGGGGCAAGAAGGCAGCGUGGGCCAUUGUUGGCAUUGUGGUUUUGCUUUCAGGUUGCCUGUUUGCCACCCAAAUGGUCAAUCAUUACUCAAUGAGUAUUAAGU
((.((((((.........((((((((.(((((((.(((((((....))))...((......))..))).))))))).)))))).)).....)))))).)).(((((...)))))...... ( -40.84)
>DroPse_CAF1 33315 120 - 1
UGAUUGCUCUGUAUAAAUGGGGCAAAAAGGCAGCUGCUGGCAUUGUAGUGCUGUUGCUUCUAGUCACGACCUGCCUCUUUGUCACGAUGAUGGUCAACAAUGAAUCAAUGCUCACGAAGU
...(((((((((....)))))))))..((((((.....(((((....)))))((.((.....)).))...))))))((((((..((.((((..(((....))))))).))...)))))). ( -29.20)
>DroSec_CAF1 22603 119 - 1
UGAUUGGCCUUUACAAAUGGGGCAAGAAGGCAGCUUGGGCCAUUGUUGGCAUUGUGGUUUUGCUUUCAGGUUGUCUGU-UGCCACCCAAAUGGUCAAUCACUACUCGAUGAGUAUUAAGU
(((((((((.........(((((((..(((((((((((((((....))))...((......))..))))))))))).)-)))).)).....))))))))).(((((...)))))...... ( -42.94)
>DroSim_CAF1 31258 120 - 1
UGAUUGGCCUUUACAAAUGGGGCAAGAAGGCAGCUUGGGCCAUUGUUGGCAUUGUGGUUUUGCUUUCAGGUUGUCUGUUUGCCACCCAAAUGGUCAAUCAUUACUCAAUGAGUAUUAAGU
(((((((((.........((((((((.(((((((((((((((....))))...((......))..))))))))))).)))))).)).....))))))))).(((((...)))))...... ( -44.34)
>DroYak_CAF1 31497 120 - 1
UGAUUGCUUUCUACAAAUGGGGCAAGAGGGCGGCUUGGGCCAUUGUUGGCAUUGUGGUUUUGCUGUCUGGUUGCCUGUUUGCCACCCAAAUGGUCAAUCAUUACUCAAUGAGUAUUAAGU
((((((.............((((((..(((((((..(((((((((....))..))))))).)))))))..))))))....((((......)))))))))).(((((...)))))...... ( -37.20)
>DroAna_CAF1 34602 120 - 1
UAAUCGCUCUCUAUAAAUGGGGCAAGAAAGCAGCCUUCGGAAUCAUUGUUCUUGUGGCGCUCCUACUGUGCUGCCUGUUUGCCACUCAAAUGGUUAAUAAUUAUACAGUGUAUAACAAGU
.....(((((........))))).....(((.(((...(((((....)))))...))))))..(((((((.((..((((.((((......)))).))))..))))))))).......... ( -26.70)
>consensus
UGAUUGCCCUUUACAAAUGGGGCAAGAAGGCAGCUUGGGCCAUUGUUGGCAUUGUGGUUUUGCUUUCAGGUUGCCUGUUUGCCACCCAAAUGGUCAAUCAUUACUCAAUGAGUAUUAAGU
((((((.((.........((((((((.(((((((((((((((....)))).....((.....)).))))))))))).)))))).)).....)).)))))).(((((...)))))...... (-26.13 = -26.22 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:35 2006