Locus 7340

Sequence ID 3R_DroMel_CAF1
Location 19,419,940 – 19,420,060
Length 120
Max. P 0.800877
window11870

overview

Window 0

Location 19,419,940 – 19,420,060
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.94
Mean single sequence MFE -36.49
Consensus MFE -25.63
Energy contribution -25.61
Covariance contribution -0.02
Combinations/Pair 1.51
Mean z-score -1.39
Structure conservation index 0.70
SVM decision value 0.62
SVM RNA-class probability 0.800877
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19419940 120 - 27905053
UCACGCUGCUCCUUGGCUUAUUGGAUUCUUAUUUGGCUACUUUCUGCAUAUAAAUCGCGGAAAGAAAUUCCAGCUAAGCAGGCCUAUUGUGUGGUUAGGCUGGAUUCUCAGCUUGGCGAU
.(((((....(((..((((((((((.((......))...((((((((.........))))))))....))))).))))))))......)))))((((((((((....))))))))))... ( -38.90)
>DroPse_CAF1 27842 120 - 1
GCAUGCGGGUCCAUGGCUGACUGGAGUUCUCUUCGGGUACUUCUUGCACCUGAAUCGUGGAAGGAAGUUCCAGUUAAGUUGGAUUAUCGUGUGGUCUGGAUGGCUGCUUAGCCUGGCCAU
(((((..((((((..((((((((((....((....)).(((((((.(((.......)))..)))))))))))))).)))))))))..)))))((((.....((((....)))).)))).. ( -41.20)
>DroSim_CAF1 27992 120 - 1
UCACGCUGCUCCUUGGCUUAUUGGAUUCCUAUUCGGCUACUUUCUGCAUAUAAAUCGCGGAAAGAAAUUCCAGCUAAGCAAGCCUGUUGUGUGGUUAGGCUGGAUUCUCAGCUUGGCGAU
.(((((.((..((((.(((((((((..((.....))...((((((((.........))))))))....))))).))))))))...)).)))))((((((((((....))))))))))... ( -42.00)
>DroEre_CAF1 20105 120 - 1
ACACGCUGCUCCCUGGCUUAUUGGAUUCCUAUUUGGCUAUUUUCUGUAUACAAAUCGCGAAAAGAAGUUUCAGUUAAGUAGGCCUACAGUUUGGAUAGGCUGGCUUCUUAGCCUGGCUUU
....(((.......(((((((..(((((((((((((((..(((((.................)))))....))))))))))).....))))..).))))))((((....)))).)))... ( -29.53)
>DroYak_CAF1 28000 120 - 1
ACACGCUGUUCCCUGGCUCAUUGGAUUCCUAUUUGGCUAUUUUCUGUAUAUAAAUCGCGAAAGGAAGUUUCAGUUAAGUAGGCCUACAGUGUGGAUAGGCUGGCUUCUUAGCCUGGCGAU
.((((((((..((((.((.(((((((((((..((.((.((((.........)))).)).)))))))..))))))..))))))...)))))))).....(((((((....)))).)))... ( -35.60)
>DroAna_CAF1 31502 120 - 1
CCAUGCGGCGCCAUGGCUGAUUGGCUUUCUUUUUGGAUACUUCCUUCAUCUAAAUCGCGGCAAAAAGUUCGAGCUCAAUAAGCUUACUGUGUGGUCCGGUUGGAUUCUUUGCCUGGCUAU
(((.((((.((((........))))......(((((((.........)))))))))))((((((.((((((((((.....)))))((((.(....))))).))))).))))))))).... ( -31.70)
>consensus
ACACGCUGCUCCAUGGCUUAUUGGAUUCCUAUUUGGCUACUUUCUGCAUAUAAAUCGCGGAAAGAAGUUCCAGCUAAGUAGGCCUACUGUGUGGUUAGGCUGGAUUCUUAGCCUGGCGAU
.(((((((.......((((((((((..((.....))...((((((((.........))))))))....))))).))))).......)))))))((((((((((....))))))))))... (-25.63 = -25.61 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:31 2006