| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,414,992 – 19,415,101 |
| Length | 109 |
| Max. P | 0.943469 |
| Location | 19,414,992 – 19,415,101 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 77.57 |
| Mean single sequence MFE | -37.03 |
| Consensus MFE | -26.60 |
| Energy contribution | -25.92 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.72 |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.943469 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19414992 109 + 27905053 -AA-UGGCCGAUGAUCGAACUCUGGACUCCCAGCGCCUGGGCAAGAGACACUGAAAGAAAACAGUACUUUCCCUGGAUAGUUCUGCCCAGGCUGACUCCAUGAUUGAUGUU -..-....((((.((.((...((((....)))).(((((((((.((...((((........))))(((.((....)).))))))))))))))....)).)).))))..... ( -33.50) >DroSec_CAF1 15759 109 + 1 -AA-CUCCCGAUGAUCGAGCCCUGGACUCCCAGAGCUUGGGUGGGAGACACUGAAAGAAAGCAGUACUUUCCUUGGAUAGUUCUGCCCAGGCUGACUCCGUGAUUGAUUUU -..-((((((....((((((.((((....)))).)))))).)))))).(((.((.((...((((.(((.((....)).))).)))).....))...)).)))......... ( -38.20) >DroSim_CAF1 16355 109 + 1 -AA-CUCCCGAUGAUCGAGCCCUGGACUCCCAGAGCUUGGGUGGGAGACACUGAAAGAAAGCAGUACUUUCCCUGGAUAGUUCUGCCCAGGCUGACUCCGUGAUUGAUUUU -..-((((((....((((((.((((....)))).)))))).)))))).(((.((.((...((((.(((.((....)).))).)))).....))...)).)))......... ( -38.20) >DroEre_CAF1 15748 109 + 1 -AA-CCGCCAAGGAUGGAACUCUGGACUCCCAGCGCCUGGGCAGGAGACACUGAAAGAAAACAGUACUUGCCCUGGAUAGUUCUGCCCAGGCUGACUUCCGUGUUGAUGCU -..-..((..((.((((((..((((....)))).((((((((((((...((((........)))).((......))....))))))))))))....)))))).))...)). ( -39.60) >DroYak_CAF1 16905 109 + 1 -AA-CGCCCAAUAAUCGAGCUCUGGACUCCCAGCGCCUGGGCAGGAGACACUGAAAGAAAACAGUACUUUCCCUGGAUGGUUCUGCCCAGGCUGACUUCCUUGUUGAUGUU -((-((..((((((..(((..((((....)))).((((((((((((...((((........)))).((.((....)).))))))))))))))...)))..)))))).)))) ( -37.80) >DroAna_CAF1 15794 111 + 1 CAACUUUCCGAUAGCGCCAGUAGUUAUUCCAAAUAUUUCGCCAGGGGAGACUGUUAGAAAGCAGUACUUUCCACGGAUUGUGCUGGACUGACUGCCUGCUGCCCUGAUAUU .............((((..(((((((.((((.(((.((((...((..((((((((....)))))).))..)).)))).)))..)))).)))))))..)).))......... ( -34.90) >consensus _AA_CUCCCGAUGAUCGAACUCUGGACUCCCAGCGCCUGGGCAGGAGACACUGAAAGAAAACAGUACUUUCCCUGGAUAGUUCUGCCCAGGCUGACUCCCUGAUUGAUGUU ............(((((....((((....)))).((((((((((((...((((........)))).((.((....)).))))))))))))))........)))))...... (-26.60 = -25.92 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:30 2006