Locus 7336

Sequence ID 3R_DroMel_CAF1
Location 19,396,453 – 19,396,545
Length 92
Max. P 0.996879
window11863

overview

Window 3

Location 19,396,453 – 19,396,545
Length 92
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 91.35
Mean single sequence MFE -25.23
Consensus MFE -22.52
Energy contribution -22.38
Covariance contribution -0.14
Combinations/Pair 1.14
Mean z-score -2.73
Structure conservation index 0.89
SVM decision value 2.76
SVM RNA-class probability 0.996879
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19396453 92 - 27905053
AUUGAAUAUGCAUAAGCCGGA------GUCGUGGCAGAAGAAGGGAAUAUCAUUCAGUAUGCAUGAUAAUUUCGUUCAUUAACGCAUAUUUAAACAGG
.((((((((((....((((..------....))))....(((.((((((((((.(.....).))))).))))).)))......))))))))))..... ( -26.30)
>DroSec_CAF1 44584 92 - 1
AUUGAAUAUGCAUAAGCCGGA------GUCGUGGCAGAAGAAGGGAAUAUCAUUCAGUAUGCAUGAUAAUUUCGUUCAUUAACGCAUAUUUAAACAGG
.((((((((((....((((..------....))))....(((.((((((((((.(.....).))))).))))).)))......))))))))))..... ( -26.30)
>DroSim_CAF1 50594 92 - 1
AUUGAAUAUGCAUAAGCCGGA------GUCGUGGCAGAAGAAGGGAAUAUCAUUCAGUAUGCAUGAUAAUUUCGUUCAUUAACGCAUAUUUAAACAGG
.((((((((((....((((..------....))))....(((.((((((((((.(.....).))))).))))).)))......))))))))))..... ( -26.30)
>DroEre_CAF1 49230 92 - 1
AUUGAAUAUGCAUAAGCCGGU------GUCGUGGCAGAAGGAGGGUAUAUCAUUCAGUAUGCAUGAUAAUUUCGUUCAUUAACGCAUAUUUAAACAGG
.((((((((((....((((..------....)))).(((.((((...((((((.(.....).)))))).)))).)))......))))))))))..... ( -25.80)
>DroYak_CAF1 49561 92 - 1
AUUGAAUAUGCAUAAGCCGGU------GUCGUGGCAGAAGGAGGGAGUAUCAUUCAGUAUGCAUGAUAAUUUCGUUCAUUAACGCAUAUUUAAACAGG
.((((((((((....((((..------....)))).(((.((((...((((((.(.....).)))))).)))).)))......))))))))))..... ( -26.90)
>DroAna_CAF1 52296 98 - 1
AUUGAAUAUGCAUAAGCUGGAACUGGAGCUGAAGCUGGAGGAGGGAAAAUAAUUUGGUAUGCAUGAUAAUUUCGUUCAUUAACGCAUAUUUAAACACA
.((((((((((...........((..(((....)))..))(((.((((.((...((.....))...)).)))).)))......))))))))))..... ( -19.80)
>consensus
AUUGAAUAUGCAUAAGCCGGA______GUCGUGGCAGAAGAAGGGAAUAUCAUUCAGUAUGCAUGAUAAUUUCGUUCAUUAACGCAUAUUUAAACAGG
.((((((((((....((((............))))....(((.((((((((((.(.....).))))).))))).)))......))))))))))..... (-22.52 = -22.38 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:24 2006