Locus 7335

Sequence ID 3R_DroMel_CAF1
Location 19,394,237 – 19,394,329
Length 92
Max. P 0.615515
window11862

overview

Window 2

Location 19,394,237 – 19,394,329
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 81.59
Mean single sequence MFE -26.98
Consensus MFE -16.50
Energy contribution -16.26
Covariance contribution -0.25
Combinations/Pair 1.19
Mean z-score -1.90
Structure conservation index 0.61
SVM decision value 0.17
SVM RNA-class probability 0.615515
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19394237 92 - 27905053
AAAAGUGCAGAGCCCAAGAACUGCGUCUCUCAAGUCACGUUCACGCGGCUGCACUUGACAGAUGCAUAUGCGAAUGAGUAUGGAAAUGGAGC
...........(((((.....(((((((.(((((((((((....)))..)).)))))).)))))))(((((......)))))....))).)) ( -25.30)
>DroPse_CAF1 46716 81 - 1
UUUACUGCAG-----UCGAACUGUGUCUGUCAUGUCACGUUCCUUUGCCUGCACUUGACAGAUGCGUAAGCAAA------UCGAAAUGGAGC
....((.((.-----((((.....((((((((.((((.((......)).)).)).))))))))((....))...------))))..)).)). ( -23.50)
>DroSim_CAF1 48390 92 - 1
AAAAGUGCAGAGCCCAAGAACUGCGUCUGUCAAGUCACGUUCACGCGGCUGCACUUGACAGAUGCAUAUGCGAAUGAGUAUGGAAAUGGAGC
...........(((((.....(((((((((((((((((((....)))..)).))))))))))))))(((((......)))))....))).)) ( -31.30)
>DroEre_CAF1 47020 92 - 1
AAAAGUGCAGAGCCCAAGAACUGUGUCUAUCAAGUCACGUUCAGGCGGCUGCACUUGACAGAUGCAUAUGCGAAUGGGUAUGGAAAUGGAGC
..((((((((.(((...((((.(((.((....)).))))))).)))..))))))))..((..(.(((((.(....).))))).)..)).... ( -30.90)
>DroYak_CAF1 47265 92 - 1
AAAAGUGCAGAGCCCAAGAACUGCGUCUGUCAAGUCACGUUCACACGACUGCACCUGACAGAUGCAUAUGCGAAUGGGUAUGGAAAUGGAGC
.......((..(((((.(...(((((((((((.((((.(((.....))))).)).)))))))))))....)...))))).)).......... ( -27.40)
>DroPer_CAF1 46774 81 - 1
UUUACUGCAG-----UCGAACUGUGUCUGUCAUGUCACGUUCCUUUGCCUGCACUUGACAGAUGCGUAAGCAAA------UCGAAAUGGAGC
....((.((.-----((((.....((((((((.((((.((......)).)).)).))))))))((....))...------))))..)).)). ( -23.50)
>consensus
AAAAGUGCAGAGCCCAAGAACUGCGUCUGUCAAGUCACGUUCACGCGGCUGCACUUGACAGAUGCAUAUGCGAAUG_GUAUGGAAAUGGAGC
.....((((............(((((((((((.((((((......))..)).)).)))))))))))..)))).................... (-16.50 = -16.26 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:23 2006