| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,393,965 – 19,394,074 |
| Length | 109 |
| Max. P | 0.978055 |
| Location | 19,393,965 – 19,394,074 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 75.21 |
| Mean single sequence MFE | -30.03 |
| Consensus MFE | -18.86 |
| Energy contribution | -18.95 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.63 |
| SVM decision value | 1.81 |
| SVM RNA-class probability | 0.978055 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19393965 109 + 27905053 CAACCCAUCCGAAUCCCCGCUGACGACCCGCUCGUUUCACUUAUUUCAGUUAUUUUUCUUGUGUGCCGCAUGCGGAGCGCAUACAAAUGAGUGGGUCA--GGCCACCCACA ..................(((...(((((((((((((.(((......))).........(((((.(((....))).)))))...))))))))))))).--)))........ ( -32.90) >DroPse_CAF1 46439 95 + 1 -ACCCCAUCC----------U-GCCGCCUGCUCGUUUCACUUAUUUCGGUUAUUUCUCCUGUGUGCCGCAUGCGGAGCGCAUACAAAUGAGUGAAGCAUAGGCCAGA---- -........(----------(-(..(((((...(((((((((((((.((........))(((((.(((....))).)))))...))))))))))))).)))))))).---- ( -33.30) >DroEre_CAF1 46704 105 + 1 CAACCCAGCCGAAUCCCCGCUGACGACCCGCUCGUUUCACUUAUUUCAGUUAUUUUUCUUGUGUGCCGCAUGCGGAGCGCAUACAAAUGAGUGGGUCA--GGCCACC---- ...((((((.(.....).))))..(((((((((((((.(((......))).........(((((.(((....))).)))))...))))))))))))).--)).....---- ( -35.70) >DroWil_CAF1 64800 96 + 1 CAAUCCA------------CAAAGCGCCUGCUCGUUUCACUUAUUUCAGUUAUUUUUCUUGUGUGCCACAUGCGGCGCGCAUACAAAUGAGUCGGACU--UAC-UCUCACU .......------------..(((..((.((((((((.(((......))).........((((((((......))))))))...)))))))).)).))--)..-....... ( -22.90) >DroAna_CAF1 49644 92 + 1 CACCCCUUCCACAUCC------GGGACCCGCUCGUUUCACUUAUUUCAGUUAUUUUUCUUGUGGGCCGCAUGCGGAGCGCAUACAAAUGAGUGAGGUA------------- ...(((..........------)))((((((((((((.(((......))).........((((..(((....)))..))))...))))))))).))).------------- ( -24.70) >DroPer_CAF1 46497 95 + 1 -ACCCCAUCC----------U-GCCGCCUGCUCGUUUCACUUAUUUCAGUUAUUUCUCCUGUGUGCCGCAUGCGGAGCGCAUACAAAUGAGUGAAGCAUAGGCCAGA---- -........(----------(-(..(((((...(((((((((((((.((......))..(((((.(((....))).)))))...))))))))))))).)))))))).---- ( -30.70) >consensus CAACCCAUCC__________U_ACCACCCGCUCGUUUCACUUAUUUCAGUUAUUUUUCUUGUGUGCCGCAUGCGGAGCGCAUACAAAUGAGUGAGGCA__GGCCACA____ .................................(((((((((((((.((........))(((((.(((....))).)))))...))))))))))))).............. (-18.86 = -18.95 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:22 2006