Locus 7333

Sequence ID 3R_DroMel_CAF1
Location 19,393,783 – 19,393,874
Length 91
Max. P 0.541170
window11860

overview

Window 0

Location 19,393,783 – 19,393,874
Length 91
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.11
Mean single sequence MFE -29.03
Consensus MFE -24.94
Energy contribution -25.38
Covariance contribution 0.45
Combinations/Pair 1.10
Mean z-score -1.26
Structure conservation index 0.86
SVM decision value 0.02
SVM RNA-class probability 0.541170
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19393783 91 - 27905053
---------------------------AUGUGCGUUUGGGUGUUAAAACGCCACAAGUGACUUUGUCAAGCAGUUACAAUUUGCUUUUUAUUGACUGGCAAGGUGUCGACACGCGCA--G
---------------------------.(((((((((((((((....))))).......((((((((((((((.......)))))..........)))))))))..))).)))))))--. ( -29.10)
>DroSec_CAF1 41926 91 - 1
---------------------------AUGUGCGUUUGGGUGUUAAAACGCCACAAGUGACUUUGUCGAGCAGUUACAAUUUGCUUUUUAUUGACCUGCAAGGUGUCGACACGCGCA--G
---------------------------.(((((((((((((((....))))).)))........(((((((((.......)))).........(((.....))).))))))))))))--. ( -28.90)
>DroWil_CAF1 64599 115 - 1
--AGCUGGCUAUGGGCGAGAGCUCUAUGUGUGCGUUGGGGUGUUAAAAUGCCACAAGUGACUUUGUUCAGCAGUUACAAUUUGCUUUUUAUUGACUUGCAAGGUGUCGAAACGAGCA---
--.(((((....((((....))))..((((.(((((..........)))))))))...........)))))..........(((((.((.(((((.........))))))).)))))--- ( -29.70)
>DroYak_CAF1 46756 93 - 1
---------------------------AUGUGCGUUUGGGUGUUAAAACGCCACAAGUGACUUUGUCGAGCAGUUACAAUUUGCUUUUUAUUGACUGGCAAGGUGUCGACACGCGCAGAG
---------------------------.(((((((((((((((....))))).......((((((((((((((.......))))))..........))))))))..))).)))))))... ( -28.80)
>DroAna_CAF1 49404 114 - 1
UAUAUUAUAUAU--GCGGCGGUGG--UAUGUGCGUUUGGGUGUUAAAACGCCACAAGUGACUUUGUCGAGCAGUUACAAUUUGCUUUUUAUUGACUGGCAAGGUGUCGACACGCGCA--G
...........(--(((.((((.(--..(((((((((........))))).))))....((((((((((((((.......))))))..........))))))))..).)).))))))--. ( -29.90)
>DroPer_CAF1 46316 90 - 1
---------------------------AUGUGCGUUUGGGUGUUAAAACGCCACAAGUGACUUUGUCGAGCAGUUACAAUUUGCUUUUUAUUGACUGGCAAGGUGUCGACACGCGCG---
---------------------------..((((((((((((((....))))).......((((((((((((((.......))))))..........))))))))..))).)))))).--- ( -27.80)
>consensus
___________________________AUGUGCGUUUGGGUGUUAAAACGCCACAAGUGACUUUGUCGAGCAGUUACAAUUUGCUUUUUAUUGACUGGCAAGGUGUCGACACGCGCA__G
............................(((((((((((((((....))))).......((((((((((((((.......))))))..........))))))))..))).)))))))... (-24.94 = -25.38 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:21 2006