| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,380,974 – 19,381,076 |
| Length | 102 |
| Max. P | 0.707659 |
| Location | 19,380,974 – 19,381,076 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 85.78 |
| Mean single sequence MFE | -23.40 |
| Consensus MFE | -16.38 |
| Energy contribution | -15.66 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.707659 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19380974 102 + 27905053 UCGCCAAUCUGGCUGAAAAUCUUAUCAGUCUCUGAGAUAACUUUCUCACAUUUUCCUCCCUUGGCAAUUAAUGGUAGAUGUUUCCUUUCGCUAAUUGCUGAU ..........((((((........))))))..(((((......)))))............(..(((((((.(((.((.......)).))).)))))))..). ( -21.90) >DroSec_CAF1 30820 102 + 1 UCGCCAAUCUGGCUGAAAAUCUUAUCAGUCUCUGAGAUAACUUUCUCACAUUUUCCUCCCUUGGCAGUUAAUGGUAGAUGUUUCCUUUCGCUAACUGCUGAU ..........((((((........))))))..(((((......)))))............(..(((((((.(((.((.......)).))).)))))))..). ( -24.20) >DroSim_CAF1 36077 102 + 1 UCGCCAAUCUGGCUGAAAAUCUUAUCAGUCUCUGAGAUAACUUUCACACAUUUUCCUCCCUUGGCAGUUAAUGGUAGAGGUUUCCUUUCGCUAACUGCUGAU ..(((.....)))(((((((((((........))))))...)))))..............(..(((((((.(((..((((...))))))).)))))))..). ( -23.30) >DroEre_CAF1 35231 102 + 1 UCGCCAAUCUGGCUGAAAAUCUUGUCAGCCUCUGAAAUAACUCUCUCGUUUUUUCCCCCCUUGCAAGUUAAUGGCAAAUUUUCCUUUUGGCUCACUGCUGGG ..((((....((((((........))))))...((((.(((......))).))))................))))...........(..((.....))..). ( -22.40) >DroYak_CAF1 34981 102 + 1 UCGCCAAUCUGGCUGAAAAUCUUGUCAGCCUCUGAAAUAACUUUUUCGCCUUUUUCUCCCUUGCAAGCUGAUGGUAAAUUUACCUUUUGGCCAACUGCUGGG ..((......((((((........))))))...((((......))))))........(((..(((.((..(.((((....))))..)..))....))).))) ( -25.20) >consensus UCGCCAAUCUGGCUGAAAAUCUUAUCAGUCUCUGAGAUAACUUUCUCACAUUUUCCUCCCUUGGCAGUUAAUGGUAGAUGUUUCCUUUCGCUAACUGCUGAU ..((((....((((((........))))))..(((((......))))).......................))))...........(..((.....))..). (-16.38 = -15.66 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:15 2006