Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,609,699 – 2,609,819 |
Length | 120 |
Max. P | 0.783111 |
Location | 2,609,699 – 2,609,819 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.25 |
Mean single sequence MFE | -40.93 |
Consensus MFE | -38.12 |
Energy contribution | -39.38 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.07 |
Mean z-score | -1.76 |
Structure conservation index | 0.93 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.783111 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2609699 120 + 27905053 GUCGAUGGACAUGCAGGCGGUCUAAGUUUCAGUUUCAGGGAGACAUGAGACCUACACCAAUGCGUAAAUAUGGAGCACAUCAUUAAUUAUGCCCAUGGGCCUGCGUUUGCCGUUGAGCCG .(((((((..(((((((((((.((.(((((((((((...))))).)))))).)).)))..........(((((.(((.(........).)))))))).))))))))...))))))).... ( -44.60) >DroSim_CAF1 73789 120 + 1 GUCGAUGGACAUGCAGGCGGUCCAAGUUUCAGUUUCAGGGAGACAUGAGACCUACACCAAUGCGUAAAUAUGGAGCACAUCAUUAAUUAUGCCCAUGGGCCUGCGUUUGCCGCUGAGCCG .(((.(((..((((((((((((((.(((((.........))))).)).))))....(((..((((((..((((......))))...))))))...)))))))))))...))).))).... ( -39.70) >DroEre_CAF1 78439 120 + 1 GUCGAUGGACAUGCAGGCGGUCUAAGUUCCAGUUUCAGGGAGACAUGAGACCUACACCAAUGCGUAAAAAUGGAGCACAUCAUUAAUUAUGCCCAUGGGCCUACGUUUGCCGCUGAGCCG (((....)))..((.((((((....((((((((((((.(....).)))))).(((........)))....))))))..............(((....)))........))))))..)).. ( -35.30) >DroYak_CAF1 76950 120 + 1 GUCGGUGGACAUGCAGGCGGUCUAAGUUUCAGUUUUAGGGACACAUGAGACCUACACCAAUGCGUAAAUAUGGAGUACAUCAUUAAUUAUGCCCAUGGGCCUGCGUUUGCCGCUGAGCCG .(((((((..(((((((((((((..((..(.......)..)).....)))))....(((..((((((..((((......))))...))))))...)))))))))))...))))))).... ( -44.10) >consensus GUCGAUGGACAUGCAGGCGGUCUAAGUUUCAGUUUCAGGGAGACAUGAGACCUACACCAAUGCGUAAAUAUGGAGCACAUCAUUAAUUAUGCCCAUGGGCCUGCGUUUGCCGCUGAGCCG .(((((((..(((((((((((.((.(((((((((((...))))).)))))).)).)))..........(((((.(((.(........).)))))))).))))))))...))))))).... (-38.12 = -39.38 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:33 2006