| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,379,586 – 19,379,680 |
| Length | 94 |
| Max. P | 0.653481 |
| Location | 19,379,586 – 19,379,680 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 79.78 |
| Mean single sequence MFE | -28.70 |
| Consensus MFE | -19.22 |
| Energy contribution | -20.22 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.653481 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19379586 94 + 27905053 --CAGUAGUCAAUCUUGCAAUUUCUGGCCAACGACAAAUGACAGGAGGCAGGCAGGUUUUUAAGGUCCUGCAGCAGGACGUCUGCC-------AACUGGCACA --..((.((((.(((((..((((.(.(....).).))))..)))))(((((((..(....)...((((((...)))))))))))))-------...)))))). ( -27.40) >DroSec_CAF1 29408 94 + 1 --CAGUAGUCAAUCUUGCAAUUUCUGGCCAACGACAAAUGACAGGAGGCAGGCAUGUUUUUAAGGUCCUGCAGCAGGACGUCUGCC-------AACUGGCACA --..((.((((.(((((..((((.(.(....).).))))..)))))(((((((.((....))..((((((...)))))))))))))-------...)))))). ( -28.40) >DroSim_CAF1 34668 94 + 1 --CAGUAGUCAAUCUUGCAAUUUCUGGCCAACGACAAAUGACAGGAGGCAGGCAGGUUUUUAAGGUCCUGCAGCAGGACGUCUGCC-------AACUGGCACA --..((.((((.(((((..((((.(.(....).).))))..)))))(((((((..(....)...((((((...)))))))))))))-------...)))))). ( -27.40) >DroEre_CAF1 33782 103 + 1 ACCGGCAGUCAAUCUUGCAAUUUCUGGCCAACGACAAAUGACAGGAGGCAGGCAGGUUUUUAAGGUCCUGCAGCAGGACGCCUGCCAACUGCCAACUGGCACA ...((((((......(((...(((((..((........)).))))).)))(((((((.......((((((...))))))))))))).)))))).......... ( -37.21) >DroAna_CAF1 37272 87 + 1 AGCAGCAGUCAAUCUUGCAAUUUGUGCCCAACGACAAGUGACAAGAGGCGGUAUGGUUUUUAAGGUCCUGCAUCAGGACAACUGCC-------U--------- .((((..(((..(((((..((((((........))))))..))))))))...............((((((...))))))..)))).-------.--------- ( -24.60) >DroPer_CAF1 34880 86 + 1 AGCAACAGUCAAUCUUGCAAUUUGUGCCCAACGACAAAUGACAAGAGGCAGACACG--------GACAGGCACC--GACUGCUGCC-------GUCUGGCAGC .((....(((..(((((..((((((........))))))..)))))....))).((--------(((.((((..--......))))-------)))))))... ( -27.20) >consensus __CAGCAGUCAAUCUUGCAAUUUCUGGCCAACGACAAAUGACAGGAGGCAGGCAGGUUUUUAAGGUCCUGCAGCAGGACGUCUGCC_______AACUGGCACA .......((((.(((((((.....((.....)).....)).)))))(((((((...........((((((...)))))))))))))..........))))... (-19.22 = -20.22 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:14 2006