| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,377,854 – 19,377,945 |
| Length | 91 |
| Max. P | 0.722313 |
| Location | 19,377,854 – 19,377,945 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 80.79 |
| Mean single sequence MFE | -18.82 |
| Consensus MFE | -10.07 |
| Energy contribution | -10.17 |
| Covariance contribution | 0.10 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.722313 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19377854 91 - 27905053 ---AC---GCCCCACACAU----CCCCCAAGUAUUUAUGU-------GCUAAAACCAGCUGGGAGAACAUAUCAAAAUGAAGUAAAAUUCAUUUUACAACAUUCAG-AC-- ---..---..........(----(.(((((((((....))-------))).........)))).)).....((..((((..((((((....))))))..))))..)-).-- ( -13.40) >DroPse_CAF1 33101 103 - 1 ---ACGCCGCCCCACACAU----CCCACAAGUAUUUAUGUGCCCAGCACUAAAACCAGCAGGGAAAACAUAUCAAAAUGAAGUAAAAUUCAUUUUACAACAUACGA-AAGA ---................----.......((((.(((((.(((.((..........)).)))...)))))..((((((((......)))))))).....))))..-.... ( -16.90) >DroWil_CAF1 47073 101 - 1 ---AC---GCCCCACACAUAUA-CCCGCAAGUAUUUAUGUGACUGGCACUAAAACCAGCUGGGAAAACAUAUCAAAAUGAAGUAAAAUUCAUUUUACAGCGUACGA-GU-- ---((---((((((((((((.(-..(....)..).)))))).((((........)))).))))..........((((((((......))))))))...))))....-..-- ( -27.40) >DroMoj_CAF1 27429 96 - 1 AAAAC---ACCCCA--------GCGCACAUGUAUUUAUGUGGCCGACACUA-AACCAGCAGGGAAAACAUAUCAAAAUGAAGUAAAAUUCAUUUUACAACCAACAC-AC-- .....---..(((.--------((.((((((....)))))))).....((.-....))..)))..........((((((((......))))))))...........-..-- ( -16.30) >DroAna_CAF1 35473 102 - 1 CUAAC---GCCCCACACAU----CCCGCAUGUAUUUAUGUGCCCGGCACUGAAGCCAGCAGGGAGAACAUAUCAAAAUGAAGUAAAAUUCAUUUUACAACAUACGUCCC-- ...((---(.........(----((((((((....)))))((..(((......))).)).)))).........((((((((......))))))))........)))...-- ( -22.00) >DroPer_CAF1 33225 103 - 1 ---ACGCCGCCCCACACAU----CCCACAAGUAUUUAUGUGCCCAGCACUAAAACCAGCAGGGAAAACAUAUCAAAAUGAAGUAAAAUUCAUUUUACAACAUACGA-AAGA ---................----.......((((.(((((.(((.((..........)).)))...)))))..((((((((......)))))))).....))))..-.... ( -16.90) >consensus ___AC___GCCCCACACAU____CCCACAAGUAUUUAUGUGCCCGGCACUAAAACCAGCAGGGAAAACAUAUCAAAAUGAAGUAAAAUUCAUUUUACAACAUACGA_AC__ .......................(((.......((((.(((.....))))))).......)))..........((((((((......))))))))................ (-10.07 = -10.17 + 0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:13 2006