| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,377,565 – 19,377,669 |
| Length | 104 |
| Max. P | 0.857351 |
| Location | 19,377,565 – 19,377,669 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 77.44 |
| Mean single sequence MFE | -30.18 |
| Consensus MFE | -15.83 |
| Energy contribution | -16.13 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.857351 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19377565 104 - 27905053 ------AGGAGCGC-CGCAG-GAGCAAAACGGAAGUUCGACGCCCAAGUGGCAGUCGCGAUAAUAGCGCCCUGCCAUGUGCGCUAAAGUAUUAGCAUAUA--CACAGGCGCACA ------....((((-(((((-(.((..(((....)))....))))..(((((((.(((.......)))..))))))).)))(((((....))))).....--....)))))... ( -41.40) >DroVir_CAF1 22460 96 - 1 -------------C-AACAG-CAGGAUGGCGGAAGUUCGACGCCCAAGUGGCACCCGCGAUAAUAGUGCUCGG-CAUGUGUGCUAAAGUAUUAGCAUAUA--AACAUAUAAACA -------------.-..(((-((..((.((((..(.....)(((.....)))..)))).)).....)))).).-..((((((((((....))))))))))--............ ( -23.70) >DroEre_CAF1 31695 91 - 1 ---------------------GAGCAAAACGGAAGUUCGACGCCCAAGUGGCAGUCGCGAUAAUAGCGCCCUGCCAUGUGCGCUAAAGUAUUAGCAUAUA--CACAGGCGCACA ---------------------(.((..(((....)))....)).)..(((((((.(((.......)))..)))))))(((((((...((((......)))--)...))))))). ( -33.20) >DroMoj_CAF1 27244 95 - 1 -------------C-AACAG-CAGGAAAGCGGAAGUUCGACGCCUAAGUGGCAGACCCGAUAAUAGUGCUCGG-CAUGUGUGCUAAAGUAUUAGCAUAUA--AACAUAUAAAC- -------------.-....(-(.....(((....)))(((.(((((..(((.....)))....))).))))))-).((((((((((....))))))))))--...........- ( -22.20) >DroAna_CAF1 35171 110 - 1 AA---CAGAAGCGA-AGCUGCUGGCAAAACGGAAGUUCGACGCCCAAGUGGCAGUCGCGAUAAUAGGUCCCUGCCAUGUGCGCUAAAGUAUUAGCAUAUAAACAUAGACUCACA ..---.....((((-.((..(((((..(((....)))....)))..))..))..)))).......((((..((...((((.(((((....))))).))))..))..)))).... ( -28.80) >DroPer_CAF1 32924 111 - 1 AAAAGCAAAAGCAAAAGCAG-CAGGGAAACGGAAGUUCGACGCCCAAGUGGCAGUCGCGAUAAUAGCGCCCUGCCAUGUGCGCUAAAGUAUUAGCAUAUA--AACAUACACACA ....(((...((....)).(-(((((.(((....))).((((((.....))).)))((.......)).))))))....)))(((((....))))).....--............ ( -31.80) >consensus _____________C_AGCAG_CAGCAAAACGGAAGUUCGACGCCCAAGUGGCAGUCGCGAUAAUAGCGCCCUGCCAUGUGCGCUAAAGUAUUAGCAUAUA__AACAGACACACA ...........................(((....))).((((((.....))).)))((((((.((((((.(......).))))))...)))).))................... (-15.83 = -16.13 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:12 2006