Locus 7326

Sequence ID 3R_DroMel_CAF1
Location 19,377,281 – 19,377,398
Length 117
Max. P 0.500000
window11850

overview

Window 0

Location 19,377,281 – 19,377,398
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 78.28
Mean single sequence MFE -29.32
Consensus MFE -16.30
Energy contribution -16.78
Covariance contribution 0.48
Combinations/Pair 1.28
Mean z-score -1.72
Structure conservation index 0.56
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19377281 117 - 27905053
UCUACUUAUGGCUGAGGGGCAAGUAAAUGGUUUGGUUAGACUUGGAAACAAGUUAAGAUUUAAAUGGGUCAAAUGGACUGUUAAUCUAAGUCUUAC---ACUAUUAUAGACUACCAGCAU
..........((((..((.......((((((.......((((((....))))))((((((((.((.((((.....))))....)).))))))))..---)))))).....))..)))).. ( -27.10)
>DroSec_CAF1 27122 117 - 1
UCUACUUAUGGCUGAGGGGCAAGUAAAUGGUUUGGUUAGACUUGGAAACAAGUUAAGAUUUAAAUGGGUCAAAUAGACUGUUUAUCUAGGUCUUAC---ACUAUUAUAGACCACCAGCUU
.........(((((........((((((((((((....((((((....))))))..(((((....)))))...))))))))))))...(((((...---........)))))..))))). ( -31.60)
>DroSim_CAF1 32369 117 - 1
UCUACUUAUGGCUGAGGGGCAAGUAAAUGGUUUGGUUAGACUUGGAAACAAGUUAAGAUUUAAAUGGGUCAAAUAGACUGUUUAUCUAGGUCUUAC---ACUAUUAUAGACUACCAGCUU
((((...((((.((..((((..((((((((((((....((((((....))))))..(((((....)))))...))))))))))))....))))..)---)))))..)))).......... ( -30.00)
>DroEre_CAF1 31429 101 - 1
UUUACUUAUCGCUGAGGGGCAAGUAAAUGGUUUGGUUAGACCUGGAUACAGAAUGCUAUUUAAAUGACUCAAAUGGGCUGCUA-GCAAGGUCUUGCUGGACU------------------
(((((((..(.(...).)..))))))).((((..((.((((((...(((((....((((((.........)))))).))).))-...)))))).))..))))------------------ ( -27.10)
>DroYak_CAF1 31123 100 - 1
UUUACUUAUGGCCGAGGGGCAAGUAACUGGUUUGGUUGCACUUGGAAGCAAGUUAGGAUUUAAAUGGGUCAGAUAGGCUGCCAAACUAGGUCUUAC---ACUU-----------------
.((((((...(((....)))))))))((((((((((.(((((((....)))))...(((((....)))))......)).)))))))))).......---....----------------- ( -30.80)
>consensus
UCUACUUAUGGCUGAGGGGCAAGUAAAUGGUUUGGUUAGACUUGGAAACAAGUUAAGAUUUAAAUGGGUCAAAUAGACUGUUAAUCUAGGUCUUAC___ACUAUUAUAGAC_ACCAGC_U
..(((((...(((....))))))))((((((...((.((((((((....((((....)))).....((((.....))))......)))))))).))...))))))............... (-16.30 = -16.78 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:11 2006