Locus 7325

Sequence ID 3R_DroMel_CAF1
Location 19,373,423 – 19,373,514
Length 91
Max. P 0.621193
window11849

overview

Window 9

Location 19,373,423 – 19,373,514
Length 91
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 89.89
Mean single sequence MFE -24.17
Consensus MFE -19.15
Energy contribution -19.73
Covariance contribution 0.59
Combinations/Pair 1.15
Mean z-score -2.40
Structure conservation index 0.79
SVM decision value 0.18
SVM RNA-class probability 0.621193
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19373423 91 - 27905053
AAUAA---AGAAUGCACAAUGUGGCUGGGAGCGGGCAU--AUUGUUCGCUUGACUACAA-------ACGUUUGCUUAUUCUCUAAUCAAACAAAAUUCAAUCA
.....---.((((((((((((((.(((....))).)))--)))))..))..........-------..(((((.(((.....))).)))))...))))..... ( -21.10)
>DroSec_CAF1 23275 91 - 1
AAUAA---AGAAUGCACAAUGUGGCUGGGAGCGGGCAU--AUUGUCCGCUUGACUACAA-------ACGUUUGCUUAUUCUCUAAUCAAACAAAAUUCAAUCA
.....---.((((......(((((....((((((((..--...))))))))..))))).-------..(((((.(((.....))).)))))...))))..... ( -23.10)
>DroSim_CAF1 28603 91 - 1
AAUAA---AGAAUGCACAAUGUGGCCGGGAGCGGGCAU--AUUGUCCGCUUGACUACAA-------ACGUUUGCUUAUUCUCUAAUCAAACAAAAUUCAAUCA
.....---.((((((((((((((.(((....))).)))--)))))..))..........-------..(((((.(((.....))).)))))...))))..... ( -23.30)
>DroEre_CAF1 27689 94 - 1
AAUAAGGAAGAGUGCACAAUGUGGCCGGGAGCGGGCAU--AUUGUCCGCUUGACUACAA-------ACGUUUGCUUAUUCUCUAAUCAAACAAAAUUCAAUCA
....((...(((((.((((((((.(((....))).)))--))))).)))))..))....-------..(((((.(((.....))).)))))............ ( -27.80)
>DroYak_CAF1 27168 93 - 1
AAUAA---AGAAUGCACAAUGUGGCCGGGAGCGGACAUAUAUUGUGCGCUUGACUACAA-------ACGUUUGCUUAUUCUCUAAUCAAACAAAAUUCAAUCA
.....---.((((((((((((((.(((....)))...))))))))))............-------..(((((.(((.....))).)))))...))))..... ( -24.80)
>DroAna_CAF1 31433 98 - 1
AAUAA---AUACGGCACAAUAUGGCCGGGGGCGGACAC--AUUGUCCGGAUGACUGCAUACGGAGGACGUUUGGUUAUUCUCUAAUCAAACAAAAUUCAAUCA
.....---...((((........))))....(((((..--...)))))(((((((.(....).))...(((((((((.....))))))))).....)).))). ( -24.90)
>consensus
AAUAA___AGAAUGCACAAUGUGGCCGGGAGCGGGCAU__AUUGUCCGCUUGACUACAA_______ACGUUUGCUUAUUCUCUAAUCAAACAAAAUUCAAUCA
.........((((......(((((....(((((((((.....)))))))))..)))))..........(((((.(((.....))).)))))...))))..... (-19.15 = -19.73 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:10 2006