Locus 7324

Sequence ID 3R_DroMel_CAF1
Location 19,371,061 – 19,371,156
Length 95
Max. P 0.965656
window11848

overview

Window 8

Location 19,371,061 – 19,371,156
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 95.58
Mean single sequence MFE -28.46
Consensus MFE -24.84
Energy contribution -24.92
Covariance contribution 0.08
Combinations/Pair 1.09
Mean z-score -1.77
Structure conservation index 0.87
SVM decision value 1.58
SVM RNA-class probability 0.965656
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19371061 95 - 27905053
UCAACUGCCGCUGUUGCGGCGCAAUUGGCAACCAACUGUCAACGGCAGUGGCCAAAAGGAGCUCUUCCAUUCCGCAACACAUGGAUUGCAUAAAG
......(((((....)))))(((((((((.....(((((.....))))).)))....((((........))))..........))))))...... ( -31.00)
>DroSec_CAF1 20877 95 - 1
UCAACUGCCUCUGUUGCGGCGCAAAUGGCAACCAACUGUCAACGGCAGUGACCAAAAGGAGCUCUUUCAUUUCGCAACACAUGGAUUGCAUAAAG
.......((..((((((((...(((.(((.....(((((.....)))))..((....)).))).)))....))))))))...))........... ( -22.00)
>DroSim_CAF1 26231 95 - 1
UCAACUGCCUCUGUUGCGGCGCAAAUGGCAACCAACUGUCAACGGCAGUGGCCAAAAGGAGCUCUUCCAUUCCGCAACACAUGGAUUGCAUAAAG
.......((..((((((((......((((.....(((((.....))))).))))...((((...))))...))))))))...))........... ( -28.50)
>DroEre_CAF1 25283 95 - 1
UCAACUGCCUCUGUUGCGGCACAAAUGCCAACCAACUGUCAACGGCAGUGGCCAAAAGGAGCUGUUCCAUUCCGCAACACAUGGAUGGCAUAAAG
.....((((((((((((((((....))))..(((.((((.....)))))))......((((........)))))))))....))).))))..... ( -28.80)
>DroYak_CAF1 24765 95 - 1
UCAGCUGCCUCUGUUGCGGCACAAAUGGCAACCAACUGUCAACGGCAGUGGCCAAAAGGAGCUCUUCCAUUCCGCAACACAUGGAUUGCAUAAAG
...((..((..((((((((......((((.....(((((.....))))).))))...((((...))))...))))))))...))...))...... ( -32.00)
>consensus
UCAACUGCCUCUGUUGCGGCGCAAAUGGCAACCAACUGUCAACGGCAGUGGCCAAAAGGAGCUCUUCCAUUCCGCAACACAUGGAUUGCAUAAAG
.......((..((((((((......((((.....(((((.....))))).))))...((((...))))...))))))))...))........... (-24.84 = -24.92 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:09 2006