Locus 7322

Sequence ID 3R_DroMel_CAF1
Location 19,360,001 – 19,360,105
Length 104
Max. P 0.951412
window11845

overview

Window 5

Location 19,360,001 – 19,360,105
Length 104
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 77.18
Mean single sequence MFE -30.80
Consensus MFE -19.64
Energy contribution -19.28
Covariance contribution -0.36
Combinations/Pair 1.39
Mean z-score -2.06
Structure conservation index 0.64
SVM decision value 1.41
SVM RNA-class probability 0.951412
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19360001 104 - 27905053
AAUCUUGGACUUCUUUGGAAGCAAAUGGAUAGCAAGCCUGAUGGUUGUGUCAAUGCUCUACAAUAUGUCUUCGGAUAUACUGAGCGACAAAGGGGUUCAAAAGA
....(((((((((((((..........((((...((((....)))).))))..(((((.....((((((....))))))..))))).))))))))))))).... ( -34.60)
>DroSec_CAF1 10804 104 - 1
ACUGUUGGACUUCUUUGGCAGCAAAUGGAUAGCAAGCCUGAUGGCAGUGUCAAAGCUCUACAAUAUGUCAUCGGAUAUACUAAGCGACAAAGGUGUUCAAAAGA
.((.((((((.((((((...((...((.....))...(((((((((.(((.........)))...))))))))).........))..)))))).)))))).)). ( -28.10)
>DroSim_CAF1 15197 104 - 1
ACUGUUGGACUUCUUUGGCAGCAAAUGGAUAGCAAGCCUGAUGGCAGUGUCAAUGCUCUACAAUAUGUCAUCGGAUAUACUAAGCGACAAAGGUGUUCAAAAGA
.((.((((((.((((((...((...((.....))...(((((((((.(((.........)))...))))))))).........))..)))))).)))))).)). ( -28.10)
>DroEre_CAF1 11279 104 - 1
AAUGAUGGACUUCUUCGGCAGCAAAUGGAUAGCAGGCUGGUUGGCAGUGACAAUGCUCUACAAUAUGUCCUUAGAUAUACUGAGCGACGAAGGAGUCCAACGGA
..((.((((((((((((.((((...((.....)).))))((((.......))))((((.....((((((....))))))..))))..)))))))))))).)).. ( -36.20)
>DroYak_CAF1 11368 104 - 1
AAUGAUGGACUUCUUUGGCAGCAAAUGGAUAGCAGGCUGGUUGGCAGUGACAAUGCUCUACAAUAUGUCCUCAGAUAUUCUGAGUGCCGAAGGCGUCCAACGGA
..((.(((((.((((((((((((..((...((((.((((.....)))).....))))...))...))).(((((.....)))))))))))))).))))).)).. ( -34.90)
>DroAna_CAF1 13676 104 - 1
ACUUCUUGACUUCUUCCGGGACAAAUGGAGAGAAGCAGUUUUUGCUGCCACAUUUCUUGCCAACACUUCUGCUGCGAUUCUUAGUGAUGAUGCUGUCCAGAAAA
..((((.(((......(((((....(((..(((((((((....))))).....))))..)))....)))))..(((..((.....))...))).))).)))).. ( -22.90)
>consensus
AAUGUUGGACUUCUUUGGCAGCAAAUGGAUAGCAAGCCUGAUGGCAGUGACAAUGCUCUACAAUAUGUCAUCGGAUAUACUGAGCGACAAAGGUGUCCAAAAGA
....((((((..(((((...((...((...((((.(((....)))........))))...)).((((((....))))))....))..)))))..)))))).... (-19.64 = -19.28 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:07 2006