Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 19,358,699 – 19,358,838 |
Length | 139 |
Max. P | 0.957065 |
Location | 19,358,699 – 19,358,802 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 76.02 |
Mean single sequence MFE | -19.65 |
Consensus MFE | -12.12 |
Energy contribution | -14.50 |
Covariance contribution | 2.38 |
Combinations/Pair | 1.17 |
Mean z-score | -2.14 |
Structure conservation index | 0.62 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.957065 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19358699 103 + 27905053 AACAGAGCUAUUGCAGCAGUAACUGUAAAAUAAUAAAAAUAAUACGUGUUAACACAAUAAACAUAACUUAUUGUGUUUGCGAUCUUCGAUCAAGCAAGCUAGG .....((((.((((((......)))))).................((((.((((((((((.......)))))))))).))((((...))))..)).))))... ( -22.40) >DroSec_CAF1 9813 93 + 1 AACAGAGCUUAUGCAGCAAUAACAG-------AU---ACAAAUACAUGUAAACACAAUACACAUAACCUAUUGUGUUUGCGGUCUUCGAUCAAGCAGGCUAAG .....((((..(((...........-------..---..........((((((((((((.........))))))))))))((((...))))..)))))))... ( -21.50) >DroSim_CAF1 9889 93 + 1 AACAGAGCUUAUGCAGCAAUAACAG-------AU---AACAAUACAUGUAAACACAAUACACAUAACCUAUUGUGUUUGCGGUCUUCGAUCAAGCAGGCUAAG .....((((..(((...........-------..---..........((((((((((((.........))))))))))))((((...))))..)))))))... ( -21.50) >DroYak_CAF1 10085 84 + 1 AACAUAGUUA--ACAGCAGGAACAG-------AA---AACAAUACUUGUAGU---AAGUAACA----UUAUUGUGUUUGGUAUCUUGGAUCAAGCAAGCUAAG ..........--..(((........-------..---.((((((..(((...---.....)))----.))))))(((((((.......)))))))..)))... ( -13.20) >consensus AACAGAGCUAAUGCAGCAAUAACAG_______AU___AACAAUACAUGUAAACACAAUAAACAUAACCUAUUGUGUUUGCGAUCUUCGAUCAAGCAAGCUAAG .....((((..(((.................................(((((((((((((.......)))))))))))))((((...))))..)))))))... (-12.12 = -14.50 + 2.38)
Location | 19,358,722 – 19,358,838 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 72.37 |
Mean single sequence MFE | -25.01 |
Consensus MFE | -9.19 |
Energy contribution | -12.03 |
Covariance contribution | 2.84 |
Combinations/Pair | 1.19 |
Mean z-score | -1.84 |
Structure conservation index | 0.37 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755258 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19358722 116 + 27905053 UGUAAAAUAAUAAAAAUAAUACGUGUUAACACAAUAAACAUAACUUAUUGUGUUUGCGAUCUUCGAUCAAGCAAGCUAGGAUGUUGAGAAACAGUUCCUGUCACUUGAAAUGGCCU (((.....................((.((((((((((.......)))))))))).))((((...))))..))).((((.....(..((..((((...))))..))..)..)))).. ( -22.40) >DroSec_CAF1 9836 106 + 1 AG-------AU---ACAAAUACAUGUAAACACAAUACACAUAACCUAUUGUGUUUGCGGUCUUCGAUCAAGCAGGCUAAGAUGUUGAGAAACAGUUCCUAUCUCUUGAAGUGACAU ..-------..---.........(((((((((((((.........)))))))))))))(((..(..(((((.(((......((((....)))).......)))))))).).))).. ( -23.42) >DroSim_CAF1 9912 106 + 1 AG-------AU---AACAAUACAUGUAAACACAAUACACAUAACCUAUUGUGUUUGCGGUCUUCGAUCAAGCAGGCUAAGAUGUUGAGAAACAGUUCCUAUCUCUUGAAGUGACCU ..-------..---..........((((((((((((.........))))))))))))((((..(..(((((.(((......((((....)))).......)))))))).).)))). ( -26.22) >DroEre_CAF1 10021 95 + 1 AC-------AA---AACAAUACUUGGGGU---AAG----A----UUAUUGUGCUUGCCAUCUUGGAGCAAGCAAAAUGAGGUGCUGAAAAGCAGCUUCUCUAUCUUGAAGGGGCCU ..-------..---........(..((((---(((----(----(((((.((((((((......).))))))).)))))(.((((....)))).).))).)))))..)........ ( -26.90) >DroYak_CAF1 10106 99 + 1 AG-------AA---AACAAUACUUGUAGU---AAGUAACA----UUAUUGUGUUUGGUAUCUUGGAUCAAGCAAGCUAAGCUGCUGAAAAGCAGUUCCUCUAUCUUGGAUUGGCCU ..-------..---.((((((..(((...---.....)))----.))))))(((((((.......)))))))..(((((((((((....))))))(((........)))))))).. ( -26.10) >consensus AG_______AU___AACAAUACAUGUAAACACAAUAAACAUAACUUAUUGUGUUUGCGAUCUUCGAUCAAGCAAGCUAAGAUGUUGAGAAACAGUUCCUAUCUCUUGAAGUGGCCU ........................((((((((((((.........)))))))))))).........(((((..........((((....))))..........)))))........ ( -9.19 = -12.03 + 2.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:06 2006