Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 19,342,922 – 19,343,012 |
Length | 90 |
Max. P | 0.742981 |
Location | 19,342,922 – 19,343,012 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 81.13 |
Mean single sequence MFE | -19.37 |
Consensus MFE | -14.30 |
Energy contribution | -14.88 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.12 |
Mean z-score | -1.60 |
Structure conservation index | 0.74 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.742981 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19342922 90 + 27905053 --GCCAAUUACCUUAACCC-----CACAUUGACACUCGCA----CU--ACUCGAUUAAUUGGCAUUGUGCCGAUUGCAUUAAUGCCGGCUAAUCAAAUUUAGA --.................-----................----..--....(((((.((((((((((((.....))).))))))))).)))))......... ( -18.00) >DroVir_CAF1 153637 95 + 1 --A-CAAUUAAGUAAACU-UGAACCCCAUUGGCACUUGGA----GCUCGGGCGAUUAAUUGACAUUGUGCUGGUUCCAUAAAUAACGACUAAUCGAAUUUAAC --.-...(((((....))-)))..............((((----(((.(.(((((........))))).).))))))).......(((....)))........ ( -17.10) >DroSim_CAF1 139652 90 + 1 --GCCAAUUACCUUAACCC-----CACAUUGACACUCGCA----CU--ACUCGAUUAAUUGGCAUUGUGCCGAUUGCAUUAAUGCCGGCUAAUCAAAUUUGGA --.((((............-----......(.....)...----..--....(((((.((((((((((((.....))).))))))))).)))))....)))). ( -19.50) >DroEre_CAF1 141142 90 + 1 --GCCAAUUACCUUAACCC-----CACAUUGACACUCGCA----CA--UGUCGAUUAAUUGGCAUUGUGCCGAUUGCAUUUAUGUCGGCUAAUCAAAUUUAGA --((((((((.........-----...(((((((......----..--))))))))))))))).(((.((((((.........))))))....)))....... ( -22.60) >DroYak_CAF1 144151 90 + 1 --GCCAAUUACCUUAACCC-----CACAUUGACACUCGCA----CA--AGUCGAUUAAUUGGCAUUGUGCCGAUUGCAUUAAUGCCGGCUAAUCAAAUUUAGA --(((..............-----...((((((.......----..--.)))))).....((((((((((.....))).)))))))))).............. ( -20.40) >DroAna_CAF1 142356 95 + 1 UAACCAAUAACCUUAACCC-----CAUAUUGACACUUGCAGCGCCA--AGCCGAUUAAUUGGCAUUGUGCCGAUUGCAUUAAUGCCCGCUAAUCGAAUUAAA- ....(((((..........-----..)))))...((((......))--)).((((((...((((((((((.....))).)))))))...)))))).......- ( -18.60) >consensus __GCCAAUUACCUUAACCC_____CACAUUGACACUCGCA____CA__AGUCGAUUAAUUGGCAUUGUGCCGAUUGCAUUAAUGCCGGCUAAUCAAAUUUAGA ....................................................(((((.((((((((((((.....)))).)))))))).)))))......... (-14.30 = -14.88 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:04 2006