Locus 7318

Sequence ID 3R_DroMel_CAF1
Location 19,332,832 – 19,332,930
Length 98
Max. P 0.570609
window11839

overview

Window 9

Location 19,332,832 – 19,332,930
Length 98
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 78.44
Mean single sequence MFE -34.32
Consensus MFE -25.83
Energy contribution -25.06
Covariance contribution -0.77
Combinations/Pair 1.48
Mean z-score -0.96
Structure conservation index 0.75
SVM decision value 0.07
SVM RNA-class probability 0.570609
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19332832 98 - 27905053
GCGUGCUUAAAGAAGUAUUUGGAGCUGGGUCGGGAUUCACGAUGUCCACUCUGCAGACGCGACUUCAGGGCGGACAUC-CAGCCUUCUCUGUCCAAUAA
..((((((....))))))((((((((((((((.......))))((((.(((((.((......)).))))).))))..)-))))........)))))... ( -32.10)
>DroSec_CAF1 128419 98 - 1
GCGUGCUUCAAGGAGUAUUUGGAGCUGGGUCGGGAUUCACGCUGUCCCCUCUGCAGACGCGACUUCAGAGCGGACAUC-CAGCCUCCUCCGUCCAAUAA
..((((((....))))))..((((((((((((.......))..((((.(((((.((......)).))))).)))))))-))).))))............ ( -32.50)
>DroSim_CAF1 130169 98 - 1
GCAUGCUUCAAGAAGUAUUUGGAGCUGGGUCGGGAUUCACGCUGUCCCCUCUGCAGACGCGACUUCAGAGCGGACAUC-CAGCCUCCUCCGUCCAAUAA
..((((((....))))))..((((((((((((.......))..((((.(((((.((......)).))))).)))))))-))).))))............ ( -31.30)
>DroEre_CAF1 132019 98 - 1
GCGUGCUUCAGGAAGUAUUUGGAGCUGGGUCGAGACAAGCGAUGUCCCCUCUGCAGAUGCGAUUUCAGGGCGGACAUC-CAGCCUGCUCCGCCCCACGA
.(((((((((((.....)))))))).((((.(((.((.(((((((((.(((((.((((...))))))))).)))))))-..)).))))).)))).))). ( -39.40)
>DroWil_CAF1 180010 98 - 1
GAUUGCUUUGAGCACUAUCUGAAGCUGGGUCUGGAUUCCCGUUGUCCACUUUGUCGGCUAGAUUUUCGAGGCGAUGGCGCAGA-CGAUGCUCGCAGCAU
...((((.((((((.(.((((..((((.((((.((.((..((((.(......).))))..))...)).))))..)))).))))-.).)))))).)))). ( -31.20)
>DroYak_CAF1 134838 98 - 1
GCGUGCUUCAGGAAGUAUUUGGAGCUGGGUCGGGACUUGAGAUGUCCCCUCUGCAGACGCGAUUUCAGGGCGGACAUC-CAGCCAGCUCCGCCCAGUGA
((((((((....))))))..((((((((((....))(((.(((((((.(((((.(((.....)))))))).)))))))-)))))))))))))....... ( -39.40)
>consensus
GCGUGCUUCAAGAAGUAUUUGGAGCUGGGUCGGGAUUCACGAUGUCCCCUCUGCAGACGCGACUUCAGAGCGGACAUC_CAGCCUGCUCCGCCCAAUAA
....((((((((.....))))))))((((..(((......(((((((.(((((.((......)).))))).)))))))........)))..)))).... (-25.83 = -25.06 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:01 2006