| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,326,930 – 19,327,026 |
| Length | 96 |
| Max. P | 0.716834 |
| Location | 19,326,930 – 19,327,026 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 70.16 |
| Mean single sequence MFE | -17.88 |
| Consensus MFE | -7.93 |
| Energy contribution | -7.98 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.716834 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19326930 96 + 27905053 -------AUCGCCGAAGAUCGUCGGUGAUUUCCUUCCAAAAAGCUGAGGCCCCAAAACACCAAAAG-CCUCAGCCCCCU-UACCCAUUCCGAUGUGUAUCCCAUC----------- -------((((((((......)))))))).............((((((((...............)-))))))).....-(((.(((....))).))).......----------- ( -25.26) >DroSec_CAF1 122636 81 + 1 -------AUCGCCGAAGAUCGUCGGUGAUUUCCUUCCAAAAAGCUAAGGCCCCAAAACCUCAAAAG-CCUCAGUCCCCU-UACCCAUUCC-------------------------- -------((((((((......)))))))).............(((.((((...............)-))).))).....-..........-------------------------- ( -15.66) >DroSim_CAF1 124392 96 + 1 -------AUCGCCGAAGAUCGUCGGUGAUUUCCUUCCUUAAAGCUAAGGCCCCAAAACCCCAAAAG-CCUCGGUCCCCU-UACCCAUUCCGAUGUGUAUCCCAUC----------- -------((((((((......)))))))).............((..((((...............)-)))..)).....-(((.(((....))).))).......----------- ( -17.76) >DroEre_CAF1 126018 109 + 1 -------AUCGGCGAAGAUCGUCGGUGAUUUCCUUCCACAAAGCUGAGGCCCCAAAACCCCAAAAGCCCCUAAUCCCCUUUACCCAUUCCGAUGUGUAUCCCAUCAUCCCACCAUC -------...((((.....))))((((...............(((..((..........))...))).......................((((.......))))....))))... ( -16.10) >DroYak_CAF1 128616 98 + 1 -------AUCGCCGAUGAUCGUCGGUGAUUUCCUUCCAAAGAGCUGAGGCCUCCAAAU------ACGCCUCAAUCCCCUUAACCCAUUCCGAUGUGUAUCCCAUCAACCCA----- -------(((((((((....)))))))))...........((..((((((........------..)))))).))...............((((.......))))......----- ( -23.80) >DroAna_CAF1 127202 89 + 1 GUUGAAAAUCGUCGAAGAUCUUUGCCGAUUUCCUUCCAACAUUAU---A-CCCGAAAC-UCAAAAU-CC--AAGCCCC--UACCUGUGCCCAUA-----CCCAU------------ ((((.((((((.((((....)))).)))))).....)))).....---.-........-.......-..--.......--..............-----.....------------ ( -8.70) >consensus _______AUCGCCGAAGAUCGUCGGUGAUUUCCUUCCAAAAAGCUGAGGCCCCAAAACCCCAAAAG_CCUCAAUCCCCU_UACCCAUUCCGAUGUGUAUCCCAUC___________ .......((((((((......))))))))....................................................................................... ( -7.93 = -7.98 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:58 2006