Locus 7312

Sequence ID 3R_DroMel_CAF1
Location 19,306,160 – 19,306,250
Length 90
Max. P 0.686315
window11824

overview

Window 4

Location 19,306,160 – 19,306,250
Length 90
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 87.11
Mean single sequence MFE -29.27
Consensus MFE -24.26
Energy contribution -23.26
Covariance contribution -1.00
Combinations/Pair 1.24
Mean z-score -1.92
Structure conservation index 0.83
SVM decision value 0.32
SVM RNA-class probability 0.686315
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19306160 90 - 27905053
GUAACUCACCCACUUAUGAUUUACGAGCCAAGAGCU--G--------AGGCCCCGA-GGCUUUGUGGGCUUUUGGCGUGCAAAUUACCAAUGCAAAUGUGC
((((.(((........))).))))..((((((((((--(--------(((((....-))))))...)))))))))).((((.........))))....... ( -28.40)
>DroPse_CAF1 120274 89 - 1
GUAACUCACCCACUUAUGAUUUACGAGCCGAGAGUG--G--------AGCCCGCGG-GGGCCUU-UGGCUUUUGGCGUGCAAAUUACCAAUGCAAAUAUGC
((((.(((........))).))))..(((((((((.--(--------(((((....-))))..)-).))))))))).((((.........))))....... ( -27.60)
>DroSec_CAF1 101952 90 - 1
GUAACUCACCCUCUUAUGAUUUACGAGCCAAGAGCU--U--------AGGCCCCGA-GGCUUUGUGGGCUUUUGGCGUGCAAAUUACCAAUGCAAAUAUGC
((((.(((........))).))))..((((((((((--(--------(((((....-))))...)))))))))))).((((.........))))....... ( -28.00)
>DroYak_CAF1 107381 93 - 1
GUAACUCACCCACUUAUGAUUUACGAGCCAAGAGCCAAG--------AGGCCCCGAAGGCUUUGUAGGCUUUUGGCGUGCAAAUUACCAAUGCAAAUAUGC
((((.(((........))).))))..((((((((((..(--------(((((.....))))))...)))))))))).((((.........))))....... ( -31.90)
>DroAna_CAF1 103881 98 - 1
GUAACUCACCCACUUAUGAUUUACGAGCCAAAAGCU--GGGGCUCCAAGGCCCCGA-GGCUCUAUGGGCUUUUGGCGUGCAAAUUACCAAUGCAAAUAUGC
((((.(((........))).))))..((((((((((--((((((....))))))(.-....)....)))))))))).((((.........))))....... ( -32.10)
>DroPer_CAF1 120332 89 - 1
GUAACUCACCCACUUAUGAUUUACGAGCCGAGAGUG--G--------AGCCCGCGG-GGGCCUU-UGGCUUUUGGCGUGCAAAUUACCAAUGCAAAUAUGC
((((.(((........))).))))..(((((((((.--(--------(((((....-))))..)-).))))))))).((((.........))))....... ( -27.60)
>consensus
GUAACUCACCCACUUAUGAUUUACGAGCCAAGAGCU__G________AGGCCCCGA_GGCUCUGUGGGCUUUUGGCGUGCAAAUUACCAAUGCAAAUAUGC
((((.(((........))).))))..((((((((((............((((.....)))).....)))))))))).((((.........))))....... (-24.26 = -23.26 +  -1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:46 2006