Locus 7311

Sequence ID 3R_DroMel_CAF1
Location 19,303,575 – 19,303,691
Length 116
Max. P 0.921694
window11823

overview

Window 3

Location 19,303,575 – 19,303,691
Length 116
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 93.50
Mean single sequence MFE -23.98
Consensus MFE -18.94
Energy contribution -19.06
Covariance contribution 0.12
Combinations/Pair 1.11
Mean z-score -2.11
Structure conservation index 0.79
SVM decision value 1.14
SVM RNA-class probability 0.921694
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19303575 116 - 27905053
AAUCAGAGCAGCAUUUGAUGAAUAUAAACAUUAGGUGAAAACUUGAAUUUGCCAUAAUAACUUGAACUCGUUAAAAGUUUGAGUGAAAAAAACUCAAAUUUUUUUCUGCAAAUAUA
..((((.....(((((((((........))))))))).....))))((((((((........)).....(..((((((((((((.......))))))))))))..).))))))... ( -25.30)
>DroSec_CAF1 99373 115 - 1
AAUCAGAGCAGCUUUUGAUGAAUAUAAACAUUAGGUGAAAACUUGAAUUUGCCAUAAUAACUUGAACUCGUUAAAAGCUUGAGUGAAC-AAACUCAAAUUGGUUUCUGCAAAUAUA
...((((((.(((((((((((.........((((((....))))))......((........))...)))))))))))((((((....-..))))))....).)))))........ ( -26.60)
>DroSim_CAF1 102389 115 - 1
AAUCAGAGCAGCAUUUGAUGAAUAUAAACAUUAGGUGAAAACUUGAAUUUGCCAUAAUAACUUGAACUCGUUAAAAGCCUGAGUGAAC-AAACUCAAAUUGGUUUCUGCAAAUAUA
..((((.....(((((((((........))))))))).....))))((((((.....((((........)))).((((((((((....-..)))))....)))))..))))))... ( -23.00)
>DroEre_CAF1 100758 115 - 1
AAUUAGAGCGGUAUUUGAUGAAUAUAAACAUUAGGUGAAAACUUGAAUUUGCCAUAAUAACUUGAACUCGUUAAAUGCUUGAGUGAAC-AAACUGAAAUUGGUUUCUGCAAAUUCA
.....(((...(((((((((........)))))))))....)))((((((((.............(((((.........)))))....-(((((......)))))..)))))))). ( -20.30)
>DroYak_CAF1 104662 115 - 1
AAUCAGAGCAGCUUAUGAUGAAUAUAAACAUUAGGUGAAAACUUGAAUUUGCCAUCAUAACUUGAACUCGUUAAAUGCUUGAGUGAAC-AAACUCAAAUUUGUUUCUGCAAAUUAA
.....((((((.((((((((....((((..((((((....)))))).)))).)))))))).)))..)))..........(((((....-..)))))(((((((....))))))).. ( -24.70)
>consensus
AAUCAGAGCAGCAUUUGAUGAAUAUAAACAUUAGGUGAAAACUUGAAUUUGCCAUAAUAACUUGAACUCGUUAAAAGCUUGAGUGAAC_AAACUCAAAUUGGUUUCUGCAAAUAUA
.......(((((.((((((((.........((((((....))))))......((........))...)))))))).))((((((.......)))))).........)))....... (-18.94 = -19.06 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:45 2006