| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,299,877 – 19,299,986 |
| Length | 109 |
| Max. P | 0.600456 |
| Location | 19,299,877 – 19,299,986 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.10 |
| Mean single sequence MFE | -19.30 |
| Consensus MFE | -8.21 |
| Energy contribution | -7.85 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.43 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.600456 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19299877 109 - 27905053 AGGCUCAUAAAUAAUGCAAU---AGCCCAG----CAGUAGAGGCAA--CAGCACCAGCAACAU--CUACAGCAAAUGUCACAUUAAACAGGCAAUAUUAAAGCUGAAAAGCAGAUGACAC .(((((((.....)))....---))))..(----(.((((((....--).((....))....)--)))).))...((((((........)...........(((....)))...))))). ( -21.60) >DroVir_CAF1 115402 88 - 1 UGCCUCAUAAAUAAUGCAG------------------------CAG--CAAC--AAGAUGCAG--CUAC--GAAAUGUCACAUUAAACAGGCGAUAUUAAAGCUGAAAAGCAGAUGACAC .((((......(((((.((------------------------(.(--((..--....))).)--))..--((....)).)))))...)))).........(((....)))......... ( -16.00) >DroGri_CAF1 109413 89 - 1 CGUCUCAUAAAUAAUGCAGC---AGC----------------------CAAC--AACAUGCAG--CUAC--GAAAUGUCACAUUAAACAGGCGAUAUUAAAGCUGAAAGGCAGAUGACAC .(((((...((((.((((((---.((----------------------....--.....)).)--))..--....(((........))).))).))))...(((....))).)).))).. ( -15.40) >DroWil_CAF1 140401 93 - 1 UGUCUCAUAAAUAAUGCAAG---AGCUGAG----CC---------A--GAGAACUGGCAAC---------GAAAAUGUCACAUUAAACAGGCAAUAUUAAAGCUGAAAAGCAGAUGACAC ((((((...((((.(((...---......(----((---------(--(....)))))...---------.....(((........))).))).))))...(((....))).)).)))). ( -21.90) >DroMoj_CAF1 114484 89 - 1 ---CUCAUAAAUAAUGCAGG---AGG-----------------CAG--CAAC--AAGAUGCAG--CUAC--GAAAUGUCACAUUAAACAGGCAAUAUUAAAGCUGAAAAGCAGAUGACAC ---.((((.((((.(((..(---.((-----------------(.(--((..--....))).)--))..--((....))........)..))).))))...(((....)))..))))... ( -16.10) >DroAna_CAF1 98137 120 - 1 CUCCUCAUAAAUAAUGCAACAUCAGCCUAGGGAACAGGUAAAGCUACACAGCUAAGGCAACACGGCUACAGCAAAUGUCACAUUAAACAGGCAAUAUUAAAGCUGAAAAGCAGAUGACAC ...................((((.((((.(....)))))...(((...(((((..(((......)))...((...(((........))).))........)))))...))).)))).... ( -24.80) >consensus CGCCUCAUAAAUAAUGCAAC___AGC_________________CAA__CAAC__AAGAAACAG__CUAC__GAAAUGUCACAUUAAACAGGCAAUAUUAAAGCUGAAAAGCAGAUGACAC ....((((...................................................................((((..........))))........(((....)))..))))... ( -8.21 = -7.85 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:44 2006