Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,608,918 – 2,609,031 |
Length | 113 |
Max. P | 0.670188 |
Location | 2,608,918 – 2,609,031 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.30 |
Mean single sequence MFE | -42.67 |
Consensus MFE | -30.61 |
Energy contribution | -32.61 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.03 |
Mean z-score | -1.88 |
Structure conservation index | 0.72 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.670188 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2608918 113 - 27905053 CUGAGGGAAGGAGUGGUUGGUGGGUGUCAUUUCUGGG-GG------GUGCCACCCGCACUCAGCUAAUCAACGCAACCUCAAAAUGUAAAUAAGGCCGAAACCAUCGUCGAGGGCUCGGU .(((((....((.(((((((((((((.(((..(...)-..------))).)))))))...)))))).)).......))))).............(((((..((........))..))))) ( -39.60) >DroSim_CAF1 72950 113 - 1 CUGAGGGAAGGAGUGGUUGGUGGGUGGCAUUUCUGGG-GG------GUGCCACCCGCACUCAGCUAAUCAACGCGACCUCAAAAUGUAAAUAAGGCCGAAACCAUCGUCGAGGGCUCGGU .(((((....((.(((((((((((((((((..(...)-..------)))))))))))...)))))).)).......))))).............(((((..((........))..))))) ( -46.70) >DroEre_CAF1 77611 120 - 1 CUAAAAGAUUUGGUGAGUGGUGGGUGGCAUAUCUGGGGGGAGGGGAGUGCCACCCGCACUCAGCUAAUCAACGCGACCUCAAAAUGUAAAUAAGGCCGAAACCAUCGUCGAGGGCUCGGU ......((((.(.((((((.((((((((((.(((........))).)))))))))))))))).).)))).........................(((((..((........))..))))) ( -44.60) >DroYak_CAF1 76119 114 - 1 CUGAAAGAGGGGGUGAGUGGUGUGUGGCAUAUCUUGGGGG------GUGCCACCCGCACUCAGCUAAUCAACGCGACCUCAAAAUGUAAAUAAGGCCGAAACCAUCGUCGAGGGUUCGGU ......((((((.((((((.((.(((((((..(....)..------))))))).)))))))).))..((.....))))))..............((((((.((........)).)))))) ( -39.80) >consensus CUGAAAGAAGGAGUGAGUGGUGGGUGGCAUAUCUGGG_GG______GUGCCACCCGCACUCAGCUAAUCAACGCGACCUCAAAAUGUAAAUAAGGCCGAAACCAUCGUCGAGGGCUCGGU .(((((.......((((((.((((((((((................))))))))))))))))((........))..))))).............(((((..((........))..))))) (-30.61 = -32.61 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:28 2006