Locus 7309

Sequence ID 3R_DroMel_CAF1
Location 19,293,623 – 19,293,715
Length 92
Max. P 0.991041
window11821

overview

Window 1

Location 19,293,623 – 19,293,715
Length 92
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 88.09
Mean single sequence MFE -25.93
Consensus MFE -21.58
Energy contribution -21.83
Covariance contribution 0.25
Combinations/Pair 1.08
Mean z-score -3.94
Structure conservation index 0.83
SVM decision value 2.25
SVM RNA-class probability 0.991041
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19293623 92 + 27905053
UCGCUACGAUUAUAAUUGUGGCGGCCCAGGGCGUUUUUCUGCCUAUAUUUCUAAGUAUAUAUCUGUUAAUAUAUUU------UUUUAUAGAUAUAGGC
.(((((((((....)))))))))(((...)))........((((((((((.((((.((((((......))))))..------.)))).)))))))))) ( -28.30)
>DroSec_CAF1 89460 94 + 1
UCGCUACGAUUAUAAUUGUGGCGGCCCAGGGCGUUUUUCUGCCUAUAUUUCUAAGUAUAUAUCUGUUAAUAUAUUUU----UUUUUAUAGAUAUAGGC
.(((((((((....)))))))))(((...)))........((((((((((.((((.((((((......))))))...----..)))).)))))))))) ( -27.00)
>DroSim_CAF1 91370 93 + 1
UCGCUACGAUUAUAAUUGUGGCGGCCCAGGGCGUUUUUCUGCCUAUAUUUCUAAGUAUAUAUCUGUUAAUAUAUUUU-----UUUUAUAGAUAUAGGC
.(((((((((....)))))))))(((...)))........((((((((((.((((.((((((......))))))...-----.)))).)))))))))) ( -27.70)
>DroEre_CAF1 90638 90 + 1
UCGCUACGAUUAUAAUUGUGGCGGCCCAGGGCGUUUUUCUGCCUGUAUUUCUAAGUAUAUAUCUGUUAAUAUUU--------UUUUUUAGAUAUAGGC
.(((((((((....)))))))))(((..(((((......))))).............((((((((..((.....--------.))..))))))))))) ( -26.40)
>DroYak_CAF1 94419 98 + 1
UCGCUACGAUUAUAAUUGUGGCGGCCCAGGGCGUUUUUCUGCCUAUAUUUCUAACUAUAUAUCUGUUCAUAUUUUUUCCUUUUUUUUUUGAUAUAGGC
.(((((((((....)))))))))(((..(((((......))))).............((((((..........................))))))))) ( -21.97)
>DroAna_CAF1 91689 85 + 1
UCGCUACGAUUUUAAUUGUAGCAGCCUACGGCGUUUUUCUGCCUAUAUUUCUAAGU-UAUAUCUCAUAGUAUCU------------GGCGAUAUAGGC
..((((((((....)))))))).(((...)))........(((((((((.(((.(.-(((........))).))------------)).))))))))) ( -24.20)
>consensus
UCGCUACGAUUAUAAUUGUGGCGGCCCAGGGCGUUUUUCUGCCUAUAUUUCUAAGUAUAUAUCUGUUAAUAUAUUU______UUUUAUAGAUAUAGGC
.(((((((((....)))))))))(((..(((((......))))).............((((((((......................))))))))))) (-21.58 = -21.83 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:43 2006