Locus 7306

Sequence ID 3R_DroMel_CAF1
Location 19,286,281 – 19,286,371
Length 90
Max. P 0.970055
window11816

overview

Window 6

Location 19,286,281 – 19,286,371
Length 90
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 80.78
Mean single sequence MFE -18.16
Consensus MFE -14.30
Energy contribution -14.98
Covariance contribution 0.68
Combinations/Pair 1.06
Mean z-score -2.26
Structure conservation index 0.79
SVM decision value 1.65
SVM RNA-class probability 0.970055
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19286281 90 - 27905053
---AAAAUAUAGACAAA----AAAAA--AAAACGC-CUGUCCCGACUAAACUGCGAAUGCAAUCGCAAUCGCAAUGAAUUUGGCAAUAGCUGGACACCCA-
---..............----.....--.....(.-.(((((.........(((((.(((....))).)))))........(((....))))))))..).- ( -18.80)
>DroSec_CAF1 82115 84 - 1
---AAAAUAUAGA----------AAA--AAAACGC-CUGUCCCGACUAAACUGCGAAUGCAAUCGCAAUCGCAAUGAAUUUGGCAAUAGCUGGACACCCA-
---..........----------...--.....(.-.(((((.........(((((.(((....))).)))))........(((....))))))))..).- ( -18.80)
>DroSim_CAF1 84032 84 - 1
---UAAAUAUAGA----------AAA--AAAACGC-CUGUCCCGACUAAACUGCGAAUGCAAUCGCAAUCGCAAUGAAUUUGGCAAUAGCUGGACACCCA-
---..........----------...--.....(.-.(((((.........(((((.(((....))).)))))........(((....))))))))..).- ( -18.80)
>DroYak_CAF1 86901 99 - 1
ACAAAAAAACAAAAAAUAUUUAGAAAAAAAAACGC-CUGUACCGACUAAGCUGCGAAUGCAAUCGCAAUCGCAAUGAAUUUGGCAAUAGCUGGACACCCA-
.................................(.-.(((.((........(((((.(((....))).)))))........(((....))))))))..).- ( -15.90)
>DroAna_CAF1 83592 76 - 1
-----------------------AAA--GCAACGCCCUGGUCGGCCUAAACUGCGAAUGCAAUCGCAAUCGCCAUGAAUUUGGCAAUAGCUAGACAGCCAA
-----------------------...--.....((....((((((......(((((......)))))...((((......))))....))).))).))... ( -18.50)
>consensus
___AAAAUAUAGA__________AAA__AAAACGC_CUGUCCCGACUAAACUGCGAAUGCAAUCGCAAUCGCAAUGAAUUUGGCAAUAGCUGGACACCCA_
.....................................(((((.........(((((.(((....))).)))))........(((....))))))))..... (-14.30 = -14.98 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:37 2006