| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,281,554 – 19,281,650 |
| Length | 96 |
| Max. P | 0.749323 |
| Location | 19,281,554 – 19,281,650 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 74.70 |
| Mean single sequence MFE | -16.03 |
| Consensus MFE | -5.52 |
| Energy contribution | -5.66 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.34 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.749323 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19281554 96 - 27905053 AC----CUGACAGUUGGCCACAAUUUAUGAGCCAUCAGCAGGCCACUUAACAAGCGCAAAGGCACAAUAACA---AUGGCCAUAAUAAAAAAUCAACAACAAG ..----((((....((((((.......)).))))))))..(((((........(.((....)).).......---.)))))...................... ( -17.19) >DroSec_CAF1 77465 99 - 1 AC----CUGACAGUUGGUCACAAUUUAUGAGCCAUCAGCAGGCCACUUAACAAGCGCAAAGGCACAAUAACAAUAAUGGCCAUAAUAAAAAAUCAACAACAAA ..----......((((((......(((((.(((((..((..(........)..))((....))............))))))))))......))))))...... ( -18.40) >DroSim_CAF1 79327 96 - 1 AC----CUGACAGUUGGCCACAAUUUAUGAGCCAUCAGCAGGCCACUUAACAAGCGCAAAGGCACAAUAACA---AUGGCCAUAAUAAAAAGUCAACAACAAA ..----......((((((......(((((.(((((......(((................))).........---))))))))))......))))))...... ( -20.35) >DroWil_CAF1 120048 81 - 1 ACAAAACGGACAGUUGGCCACAAUUUAUG-----------GGCCACUUAACG---GCA-----ACAAUAACA---AGUAUCAAAACUAAACAUUUACGAGAAA ......((...(((.((((.((.....))-----------)))))))...))---...-----.........---............................ ( -11.50) >DroAna_CAF1 78744 87 - 1 AC----CUGACAGUUAGCCACAAUUUAUGAGCCAGCAGCAGGCCACUUAGCCAGA-UAAAACCACAAUAACA---AUGACAAU--------GGCAAUAACAAG .(----(((...(((.((((.......)).)).)))..)))).......((((..-................---.......)--------)))......... ( -12.71) >consensus AC____CUGACAGUUGGCCACAAUUUAUGAGCCAUCAGCAGGCCACUUAACAAGCGCAAAGGCACAAUAACA___AUGGCCAUAAUAAAAAAUCAACAACAAA ...........(((.((((.((.....)).((.....)).)))))))........................................................ ( -5.52 = -5.66 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:31 2006