Locus 7301

Sequence ID 3R_DroMel_CAF1
Location 19,276,170 – 19,276,260
Length 90
Max. P 0.991629
window11804

overview

Window 4

Location 19,276,170 – 19,276,260
Length 90
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 92.31
Mean single sequence MFE -35.76
Consensus MFE -28.82
Energy contribution -28.02
Covariance contribution -0.80
Combinations/Pair 1.17
Mean z-score -2.60
Structure conservation index 0.81
SVM decision value 2.28
SVM RNA-class probability 0.991629
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19276170 90 + 27905053
AACA---GAGCCAGAGUGGAGUAGU-GAGGUA---GCAGACCGCAGUGGGCAAACACUUGCUGCCUGGUUGGCUACCGGGUCCAAAAAGCGACCCAG
.((.---(..((.....))..).))-..((((---((.((((((((..((......))..))))..)))).))))))((((((.....).))))).. ( -36.60)
>DroSec_CAF1 71685 87 + 1
AACA---GAGC---GGUGGAGCGGU-GAGGUA---GCAGACCGCAGUGGGCAAACACUUGCUGCCUGGUUGGCUACCGGGUCCAAAAAGCGACCCAG
..((---..((---......))..)-).((((---((.((((((((..((......))..))))..)))).))))))((((((.....).))))).. ( -38.60)
>DroSim_CAF1 73925 87 + 1
AACA---GAGC---GGCGGAGUAGU-GAGGUA---GUAGACCGCAGUGGGCAAACACUUGCUGCCUGGUUGGCUACCGGGUCCAAAAAGCGACCCAG
..((---..((---......))..)-).((((---((.((((((((..((......))..))))..)))).))))))((((((.....).))))).. ( -34.40)
>DroEre_CAF1 73273 87 + 1
AGCA---GAGC---GGUGGAGUAGU-GAGGUA---GUAGACCGCAGUGGGCAAACACUUGCUGCCUGGUUGGCUACCGGGUCCAAAAAGCGACCCAG
..((---..((---......))..)-).((((---((.((((((((..((......))..))))..)))).))))))((((((.....).))))).. ( -34.10)
>DroYak_CAF1 76141 94 + 1
AACACUGGAGC---AGUGGAGUGGUAGAGGUAGAGGUAGACCGCAGUGGGCAAACACUUGCUGCCUGGUUGGCUACCGGGUCCAAAAAGCGACCCAG
..(((((...)---))))..........(((((.....((((((((..((......))..))))..))))..)))))((((((.....).))))).. ( -35.10)
>consensus
AACA___GAGC___GGUGGAGUAGU_GAGGUA___GUAGACCGCAGUGGGCAAACACUUGCUGCCUGGUUGGCUACCGGGUCCAAAAAGCGACCCAG
..............(((.((.(((....(((........)))((((..((......))..))))))).)).)))...((((((.....).))))).. (-28.82 = -28.02 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:26 2006