Locus 73

Sequence ID 3R_DroMel_CAF1
Location 491,102 – 491,207
Length 105
Max. P 0.991398
window129

overview

Window 9

Location 491,102 – 491,207
Length 105
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 64.67
Mean single sequence MFE -23.17
Consensus MFE -13.82
Energy contribution -14.50
Covariance contribution 0.69
Combinations/Pair 1.19
Mean z-score -1.85
Structure conservation index 0.60
SVM decision value 2.27
SVM RNA-class probability 0.991398
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 491102 105 - 27905053
GAUAUACUCGUAAAUAGUUAAGCGAAUUGCGUUAGCUUAUCGUUGGUGCUGGCGAG--------------CGAAAACU-GAAUUUCAGUGCCAGCAAUUUAAGGGUAAAAGGUAUAUAAC
.(((((((........(((((((.....)).)))))(((((.(((.((((((((..--------------.((((...-...))))..))))))))...))).)))))..)))))))... ( -29.30)
>DroSec_CAF1 19083 114 - 1
GAUAUACUCGUAGAUAGUUAAACGAAUGGCGUUAGCUUAUCGUUGGCACUUUAUAUAUAAAAACCUCUUUCUACAACAAUAUUUUUAGUUGCAACAACAUUAGGA------AUAUAUUAC
((((((.(((((((.((...(((((..(((....)))..)))))((...((((....))))..)).)).))))).............((((...)))).....))------.)))))).. ( -19.10)
>DroSim_CAF1 18563 114 - 1
GAUAUACUCUUAGAUAGUUAAACGAAUGGCGUUAGCUUAUCGUUGGCACUUUAUAUAUACAAACCUCUUUCUACAACAAUAUUUUUAGUUGCAACAACAUUAGGA------AUAUAUUAC
((((((.((((((((((((((.((.....))))))).))))(((((((((....((((....................))))....)).)))..))))..)))))------.)))))).. ( -18.55)
>DroYak_CAF1 35022 92 - 1
----UA--UGUAGAUAGGUAAACGAAUCGCGUUACCUUAUCGUUGGUGCUGUCAAGAUAAA---------------------UUUCAGUGCCAGCAUUUUAUAUAUACAA-AUGUUUUAC
----..--(((((((((((((.((.....))))))).))))(((((..(((..........---------------------...)))..)))))..........)))).-......... ( -25.72)
>consensus
GAUAUACUCGUAGAUAGUUAAACGAAUGGCGUUAGCUUAUCGUUGGCACUGUAUAGAUAAA_________CUACAACA_UAUUUUCAGUGCCAACAACAUAAGGA______AUAUAUUAC
............((((((((.(((.....))))))).))))((((((((((..................................))))))))))......................... (-13.82 = -14.50 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:19 2006