Locus 7298

Sequence ID 3R_DroMel_CAF1
Location 19,269,729 – 19,269,825
Length 96
Max. P 0.886050
window11800

overview

Window 0

Location 19,269,729 – 19,269,825
Length 96
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 79.50
Mean single sequence MFE -35.27
Consensus MFE -20.26
Energy contribution -20.93
Covariance contribution 0.67
Combinations/Pair 1.11
Mean z-score -2.31
Structure conservation index 0.57
SVM decision value 0.94
SVM RNA-class probability 0.886050
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19269729 96 - 27905053
CACCACUGGCACCAACCGCCCACACGCCCACAAGGCGUCGAAAUGGGCUCGGCUGCCAUUU-UGGGUGGGUGUUGUGCUCUCAACACUUUCGCCAGC
.....(((((.....((((((..(((((.....))))).(((((((.(......)))))))-)))))))((((((......))))))....))))). ( -41.60)
>DroPse_CAF1 80612 81 - 1
CAGCAGC-------------AGCACGCCCACCGGGUGUGGAAAUGGGUACGGCUGCCAUUU-UGGGUGGGUGUUG--CACUCAACACUUUCGCCAGU
..(((((-------------..(((((((...)))))))....((....)))))))....(-((((..(((((((--....)))))))..).)))). ( -30.70)
>DroEre_CAF1 66709 88 - 1
CACCACCGGCACCACCCG--------CCCACAAGGCGUCGAAAUGGGCACGGCUGCCAUUU-UGGGUGGGUGUUGUGCUCUCAACACUUUCGCCAGC
.......(((.(((((((--------((.....)))...(((((((.((....))))))))-)))))))((((((......))))))....)))... ( -36.50)
>DroYak_CAF1 69554 88 - 1
CACCACCGGCACCACCCG--------CCCACAAGGCGUCGAAAUGGGCUAGGCUGCCAUUU-UGGGUGGGUGUUGUGCUCUCAACACUUUCGCCAGC
.......(((.(((((((--------((.....)))...(((((((.(......)))))))-)))))))((((((......))))))....)))... ( -36.40)
>DroAna_CAF1 67285 90 - 1
CACCACCGGCACCAC-----CACACGCCCACGAGGCGUCGAAAUGGGCACGGCUGCCAUUUUUUGGUGGGUGUUGUGCUCUCAACACUUUCGCCA--
.......(((.((((-----((.(((((.....))))).(((((((.((....))))))))).))))))((((((......))))))....))).-- ( -35.70)
>DroPer_CAF1 80729 81 - 1
CAGCAGC-------------AGCACGCCCACCGGGUGUGGAAAUGGGUACGGCUGCCAUUU-UGGGUGGGUGUUG--CACUCAACACUUUCGCCAGU
..(((((-------------..(((((((...)))))))....((....)))))))....(-((((..(((((((--....)))))))..).)))). ( -30.70)
>consensus
CACCACCGGCACCAC_______CACGCCCACAAGGCGUCGAAAUGGGCACGGCUGCCAUUU_UGGGUGGGUGUUGUGCUCUCAACACUUUCGCCAGC
.......................(((((.....))))).......(((......))).......(((((((((((......)))))))..))))... (-20.26 = -20.93 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:23 2006