Locus 7297

Sequence ID 3R_DroMel_CAF1
Location 19,265,581 – 19,265,685
Length 104
Max. P 0.646508
window11799

overview

Window 9

Location 19,265,581 – 19,265,685
Length 104
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 86.35
Mean single sequence MFE -37.46
Consensus MFE -27.33
Energy contribution -27.67
Covariance contribution 0.33
Combinations/Pair 1.03
Mean z-score -2.94
Structure conservation index 0.73
SVM decision value 0.23
SVM RNA-class probability 0.646508
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19265581 104 - 27905053
ACGGCGGCCAUUUGUGUUUCGAUUUUGGCCACAAGAGCUU--GGCGGUUUUUUUUUUUCAGUCGGUUUUUGGUCAAAACAAGAUCGCAGCAAGUGGCACGCAAUGC
...((((((((((((....((((((((....((((((((.--(((...............))))))))))).......))))))))..))))))))).)))..... ( -36.56)
>DroPse_CAF1 76177 97 - 1
ACGGCGGCCAUUUGUGUUUCGUUUUGGGCCACAAGCGCUCUUGGCU---------UUUUAGUGCUCUUUUGGUCAAAACGAGAUCGCAGCAAGUGGCACGCAAUGC
...((((((((((((((((((((((((.(((.(((.((.((.....---------....)).)).))).)))))))))))))))....))))))))).)))..... ( -40.90)
>DroSec_CAF1 61179 99 - 1
ACGGCGGCCAUUUGUGUUUCGAUUUUGGCCACAAGCGCUC--GGCGGUUU-----UUUCAGUCGGUUUUUGGUCAAAACAAGAUCGCAGCAAGUGGCACGCAAUGC
...((((((((((((....((((((((((((.((((...(--(((.....-----.....)))))))).))))))).....)))))..))))))))).)))..... ( -36.50)
>DroSim_CAF1 61584 99 - 1
ACGGCGGCCAUUUGUGUUUCGAUUUUGGCCACAAGCGCUC--GGCGGUUU-----UUUCAGUCGGUUUUUGGUCAAAACAAGAUCGCAGCAAGUGGCACGCAAUGC
...((((((((((((....((((((((((((.((((...(--(((.....-----.....)))))))).))))))).....)))))..))))))))).)))..... ( -36.50)
>DroEre_CAF1 62446 88 - 1
GCGGCGGCCAUUUGUGUUUCGAUUUUGGCCACAAGCGCUU--GGCGGUUU----------------UUUUGGUCAAAACAAGAUCGCAGCAAGUGGCACGCAAUGC
((.((((((((((((....((((((((((.....))..((--(((.(...----------------...).)))))..))))))))..))))))))).)))...)) ( -33.40)
>DroPer_CAF1 76278 97 - 1
ACGGCGGCCAUUUGUGUUUCGUUUUGGGCCACAAGCGCUCUUGGCU---------UUUUAGUGCUCUUUUGGUCAAAACGAGAUCGCAGCAAGUGGCACGCAAUGC
...((((((((((((((((((((((((.(((.(((.((.((.....---------....)).)).))).)))))))))))))))....))))))))).)))..... ( -40.90)
>consensus
ACGGCGGCCAUUUGUGUUUCGAUUUUGGCCACAAGCGCUC__GGCGGUUU_____UUUCAGUCGGUUUUUGGUCAAAACAAGAUCGCAGCAAGUGGCACGCAAUGC
...((((((((((((((.((..(((((((((.(((.((.....))....................))).)))))))))...))..))).)))))))).)))..... (-27.33 = -27.67 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:22 2006