Locus 7295

Sequence ID 3R_DroMel_CAF1
Location 19,259,822 – 19,259,924
Length 102
Max. P 0.640223
window11796

overview

Window 6

Location 19,259,822 – 19,259,924
Length 102
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 90.57
Mean single sequence MFE -23.42
Consensus MFE -17.90
Energy contribution -18.18
Covariance contribution 0.28
Combinations/Pair 1.09
Mean z-score -1.64
Structure conservation index 0.76
SVM decision value 0.22
SVM RNA-class probability 0.640223
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19259822 102 - 27905053
UGAAAAUAUCCGA-----CGCGCAGAAGCCAUUGGCCGAAAGGAAUUUGGAA----AAAAUGUAUAACAAAUGUGCGGCAAAUGAGCUGUCAUAGGUAAAUAAGGAAGACG
........(((..-----((((((....(((....((....))....)))..----....((.....))..))))))((..((((....))))..))......)))..... ( -22.90)
>DroSec_CAF1 55446 102 - 1
UGAAAAUAUCCGA-----CCCGCAGAAGCCAUUGGCCGAAAGGAAUUUCGAA----AAAAUUUAUAACAAAUCUGCGGCAAAUGAGCUGUCGUAGGUAAAUAAGGAAGACG
........(((.(-----((..(...(((((((.((((...(((........----...............))).)))).)))).)))...)..)))......)))..... ( -22.20)
>DroSim_CAF1 55630 102 - 1
UGAAAAUAUCCAA-----CCCGCAGAAGCCAUUGGCUGAAAGGAAUUUCGAA----AAAAUUUAUAACAAAUCUGCGGCAAAUGAGCUGUCGUAGGUAAAUAAGGAAGACG
........(((..-----.((.....((((...))))....)).........----..............((((((((((.......))))))))))......)))..... ( -22.10)
>DroEre_CAF1 56672 106 - 1
AGAAAAUACCCGAUGUAGCCCGCAGAAGCCAUUGGCCGAAAGGAAUUUCGAA-----UAAUGUAUAACAAAUCUGCGGCAAAUGAGCUGUCGUAGGUAAAUAAGGAAGACG
......((((..((((((((((((((.(((...)))(((((....)))))..-----..............))))))).......)))).))).))))............. ( -25.61)
>DroYak_CAF1 58929 111 - 1
AGAAAAUAUCCAACCCGACCCGCAGAAGCCAUUGGCCGAAAGGAAUUUCGAAGAAAAAAAUGUAUAACAAAUCUGCGGCAAAUGAGCUGUCGUAGGUAAAUAAGGAAGACG
........(((......(((..(...(((((((.((((...(((.((((...))))....((.....))..))).)))).)))).)))...)..)))......)))..... ( -24.30)
>consensus
UGAAAAUAUCCGA_____CCCGCAGAAGCCAUUGGCCGAAAGGAAUUUCGAA____AAAAUGUAUAACAAAUCUGCGGCAAAUGAGCUGUCGUAGGUAAAUAAGGAAGACG
........(((.........((((((.(((...)))(((((....))))).....................))))))((..((((....))))..))......)))..... (-17.90 = -18.18 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:19 2006