Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 19,255,928 – 19,256,030 |
Length | 102 |
Max. P | 0.650456 |
Location | 19,255,928 – 19,256,030 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 78.42 |
Mean single sequence MFE | -25.23 |
Consensus MFE | -12.64 |
Energy contribution | -13.17 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.06 |
Mean z-score | -2.03 |
Structure conservation index | 0.50 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650456 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19255928 102 - 27905053 CUGCU----UAAAUUAGUAAAUU-CCGUGAGCAGGCCAAGCGCU----UGGGAAGCAAUAAUUAUAUACUAAUUAAGCGUAUAAUUAGCUAAUUAGAACUGCGCAGCGACU .((((----......))))....-.(((..((((.((((....)----)))..(((..((((((((..((.....))..)))))))))))........))))...)))... ( -23.20) >DroPse_CAF1 66166 107 - 1 CUGUC----CAAAUCAGUCACUCGAUGGGAGCAAGGCAAGCGCCUGCCUGGCCAGCAAUAAUUAUAUACUAAUUUAGCGUAUAAUUAGCUAAUUAGAACUGCGCAGCAACA ((((.----((..((.(((.(((.....)))..(((((......)))))))).(((..((((((((..(((...)))..))))))))))).....))..)).))))..... ( -23.50) >DroEre_CAF1 52740 102 - 1 CAGUU----UAAAUUAGUAAAUU-CCGUGAGCAGACCAAGCGCU----CGGGCAGCAAUAAUUAUAUACUAAUUUAGCGUAUAAUUAGCUAAUUAGAACUGCGCAGCGACU (((((----(.(((((((....(-(((.(.((.......)).).----))))......((((((((..(((...)))..))))))))))))))).)))))).......... ( -25.00) >DroWil_CAF1 89558 102 - 1 CCGCUUCGCAAAAUUAGUCACUCUCCAUGGGCA-----UGCGCC----CGGCUAGCAAUAAUUAUACACUAAUUUAGCGUAUAAUUAGCUAAUUAGAACUGCGCAGCAAAA ..(((.((((...(((((.........(((((.-----...)))----))..((((..(((((((((.(((...))).))))))))))))))))))...)))).))).... ( -29.60) >DroAna_CAF1 53635 91 - 1 UCGCA----CAAAUUAGUCACUCGGCUUGAGCAAGCC----------------AGCAAUAAUUAUAUACUAAUUUAGCGUAUAAUUAGCUAAUUAGAACUGCGCAGCAACU .((((----(.(((((((.....(((((....)))))----------------.....((((((((..(((...)))..))))))))))))))).)...))))........ ( -21.20) >DroPer_CAF1 66293 107 - 1 CUGGC----CAAAUCAGUCACUCGAUGGGAGCAAGGCAAGCGCCUGCCUGGCCAGCAAUAAUUAUAUACUAAUUUAGCGUAUAAUUAGCUAAUUAGAACUGCGCAGCAACA .((((----((..((.(((....)))..))(((.(((....)))))).))))))((..((((((((..(((...)))..))))))))((...........))))....... ( -28.90) >consensus CUGCU____CAAAUUAGUCACUCGCCGUGAGCAAGCCAAGCGCC____UGGCCAGCAAUAAUUAUAUACUAAUUUAGCGUAUAAUUAGCUAAUUAGAACUGCGCAGCAACA .......................................((((..........(((..(((((((((.((.....)).))))))))))))..........))))....... (-12.64 = -13.17 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:18 2006