Locus 7293

Sequence ID 3R_DroMel_CAF1
Location 19,252,904 – 19,253,002
Length 98
Max. P 0.593292
window11794

overview

Window 4

Location 19,252,904 – 19,253,002
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 82.24
Mean single sequence MFE -25.75
Consensus MFE -16.10
Energy contribution -18.93
Covariance contribution 2.84
Combinations/Pair 1.16
Mean z-score -1.94
Structure conservation index 0.63
SVM decision value 0.12
SVM RNA-class probability 0.593292
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19252904 98 + 27905053
GUAUUCGGAGGGGGGCAGCAAUAAAAAAUUCAUCUCUGCCAUGAAAACGGUAGAGUCGAGAGCUAAUCAGGGGCUCAAUUUAUUGUAAGUCCUCGGGG
..........((((((.((((((((....((..(((((((.(....).)))))))..))(((((.......)))))..))))))))..)))))).... ( -34.20)
>DroSec_CAF1 48484 98 + 1
CUAUUUGGAGGGGGGAAACAAUAAAAAAUUCAUCUCUGCCAUGAAAACGGUAGAGUCGAGAGCUAAUCAGGGGCUCAAUUUAUGGUAAGUCCUCGGGG
....((.(((((.(....).(((((....((..(((((((.(....).)))))))..))(((((.......)))))..)))))......))))).)). ( -28.50)
>DroSim_CAF1 48653 98 + 1
CUAUUCGGAGGGGGGAAACAAUAAAAAAUUCAUCUCUGCCAUGAAAACGGUAGAGUCGAGAGCUAAUCAGGGGCUCAAUUUAUGGUAAGUCCUCGGGG
....((.(((((.(....).(((((....((..(((((((.(....).)))))))..))(((((.......)))))..)))))......))))).)). ( -29.90)
>DroEre_CAF1 49716 93 + 1
CUAUUC----GGGGGUAACAAUAAAAAAUGCAUCUCUGCCAUGAAAACGGUAGAGUCGAGAGCUAAUCAGGAUCUCAAUUUAUU-UAAGUCCUCGGGG
...(((----(((((....((((((........(((((((.(....).)))))))..((((.((.....)).))))..))))))-....)))))))). ( -25.90)
>DroYak_CAF1 50566 89 + 1
CUAUUC----GGGGGUAACAAUAAAAAAUGCAUC-----CAUGAAAACGGUAGAGUCGAGAGCUAAUCAGGGGCUCAAUUUAUUGUAAGUCCUCGGGG
...(((----(((((..((((((((.........-----........(((.....))).(((((.......)))))..))))))))...)))))))). ( -22.00)
>DroAna_CAF1 50598 79 + 1
----------GGGGACUCGAAUAAAAAAUUCAUCUCUACCAUGAAACCU--------CAAAGCUAAUCAGG-GUUAAAUUUAUUGUGAAUCCUCUGGG
----------(((((.(((((((((....((((.......))))(((((--------............))-)))...)))))).))).))))).... ( -14.00)
>consensus
CUAUUC____GGGGGAAACAAUAAAAAAUUCAUCUCUGCCAUGAAAACGGUAGAGUCGAGAGCUAAUCAGGGGCUCAAUUUAUUGUAAGUCCUCGGGG
..........(((((..((((((((........(((((((........)))))))....(((((.......)))))..))))))))...))))).... (-16.10 = -18.93 +   2.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:17 2006