| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,247,932 – 19,248,025 |
| Length | 93 |
| Max. P | 0.608375 |
| Location | 19,247,932 – 19,248,025 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 81.40 |
| Mean single sequence MFE | -20.35 |
| Consensus MFE | -13.22 |
| Energy contribution | -13.55 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.608375 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19247932 93 - 27905053 UUAAAAUGCAGGCAAAACGGGAAAGAGUUGCGGUCAGUCUGGGCUACCGCAAAAUGUAUAAAUUAUGCAAAAAAGGUAUUCGGACGAGAGA---------------AA ..........(((..(((........)))...))).(((((((.((((......((((((...)))))).....)))))))))))......---------------.. ( -20.30) >DroPse_CAF1 57668 98 - 1 UUAAAAUGCAGGCUAAACGGGAAAGAGUUGCGGUCACUCUAAGCUACCGCAAAAUGUAUAAAUUAUGCAAAG-------UCAAACAGCGGCAGCAGC---AGCAGCCA ..........((((...(......).(((((((.....))..(((.((((....((((((...))))))..(-------.....).)))).))).))---))))))). ( -24.60) >DroSim_CAF1 43805 93 - 1 UUAAAAUGCAGGCAAAACGGGAAAGAGUUGCGGUCAGUCUGGGCUACCGCAAAAUGUAUAAAUUAUGCAAAAAAGGUAUUCGAACGAGAGA---------------AA ....(((((..................(((((((.(((....))))))))))..((((((...))))))......)))))....(....).---------------.. ( -18.10) >DroEre_CAF1 44727 93 - 1 UUAAAAUGCAGGCAAAACGGGAAAGAGUUGCGGUCAGUCUAAGCUACCGCAAAAUGUAUAAAUUAUGCAAAAAAGGUAUUGGAACGAGAGA---------------AA ....(((((..................(((((((.(((....))))))))))..((((((...))))))......)))))....(....).---------------.. ( -17.20) >DroYak_CAF1 45498 93 - 1 UUAAAAUGCAGGCAAAACGGGAAAGAGUUGCGGUCAGUCUGCGCUACCGCAAAAUGUAUAAAUUAUGCAAAAAAGGUAUUCGAACAAGAGA---------------AA .......((((((....((.((.....)).))....))))))..((((......((((((...)))))).....))))(((........))---------------). ( -18.10) >DroAna_CAF1 45273 101 - 1 UUAAAAUGCAGGCAAAACGGGAAAGAGUUGCGGUCACUCAGAGCUACCGCAAAAUGUAUAAAUUAUGCAAAA-------UCAAACAGCAGCAGCAGCAGUGGUAGCGG ..........(((..(((........)))...))).......((((((((....((((((...))))))...-------.......((....))....)))))))).. ( -23.80) >consensus UUAAAAUGCAGGCAAAACGGGAAAGAGUUGCGGUCAGUCUGAGCUACCGCAAAAUGUAUAAAUUAUGCAAAAAAGGUAUUCGAACAAGAGA_______________AA ......(((((......).........(((((((.(((....)))))))))).............))))....................................... (-13.22 = -13.55 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:15 2006