Locus 7290

Sequence ID 3R_DroMel_CAF1
Location 19,239,219 – 19,239,317
Length 98
Max. P 0.626548
window11791

overview

Window 1

Location 19,239,219 – 19,239,317
Length 98
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 87.14
Mean single sequence MFE -28.30
Consensus MFE -23.18
Energy contribution -23.34
Covariance contribution 0.16
Combinations/Pair 1.15
Mean z-score -1.51
Structure conservation index 0.82
SVM decision value 0.19
SVM RNA-class probability 0.626548
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19239219 98 + 27905053
UUGUU---UGUUUUUUUGUUUUGUG---UGGUUACUCCAAAACACUGACACUGACACCGACAUGGAAACCAACUGACUCCCAGUCGGUUGGGCUCCAUGUGUGC
.((((---.((.((..(((((((.(---.(....).))))))))..)).)).))))...(((((((..(((((((((.....)))))))))..))))))).... ( -37.10)
>DroSec_CAF1 34914 96 + 1
UUGUU---UG----UUUGUUUUGUGGUUUGGUUACCCCAAAACACUGACACUGACACCGACAUGGAAACCAUCUGACUCCCAGUCGGUUGGGCU-UAUGUGUGC
.((((---((----(((((((((.(((......))).)))))))..))))..))))...((((((...(((.(((((.....))))).)))..)-))))).... ( -27.50)
>DroSim_CAF1 35220 96 + 1
UUGUU---UG----UUUGUUUUGUGGUUUGGUUACCUUAAAACUCUGACACUGACACCGACAUGGAAACCAACUGACUCCCAGUCGGUUGGGCU-UAUGUGUGC
.((((---((----((.((((((.(((......))).))))))...))))..))))...((((((...(((((((((.....)))))))))..)-))))).... ( -29.60)
>DroEre_CAF1 35924 97 + 1
UUGGU---UUUUCGUUUGUUUUGUG---UGGUUACCCCAAAGCACUGACACUGACACCGACAUGGAAACCAACCGACUCGCAGUCGCUUGGGCU-UAUGUGUGU
.((((---.((..((((((((((.(---.((...))))))))))..)))...)).))))((((((...((((.((((.....)))).))))..)-))))).... ( -24.00)
>DroYak_CAF1 36498 100 + 1
UUAGUUCGUUUUGGUUUGUUUUGUG---UGGUUACCCCAAAGCACUGACACUGACACCGACAUGGAAACCAACUGACUCCCAGUCGCUUGGGCU-UAUGUGUGU
(((((..(((((((..((.......---....))..)))))))))))).....((((..((((((...((((.((((.....)))).))))..)-))))))))) ( -23.30)
>consensus
UUGUU___UGUU__UUUGUUUUGUG___UGGUUACCCCAAAACACUGACACUGACACCGACAUGGAAACCAACUGACUCCCAGUCGGUUGGGCU_UAUGUGUGC
................((((..(((...(((.....)))...))).))))....(((..(((((....(((((((((.....)))))))))....)))))))). (-23.18 = -23.34 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:12 2006